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79
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Comment: Comment: Assymetric MA plot with no overall trend
18 hours ago Michael Love 42k
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82
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Answer: Answer: Can DESeq2 rlog normalized matrix reflects time course result directly?
18 hours ago Michael Love 42k
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440
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
1 day ago Michael Love 42k
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79
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Answer: Answer: Assymetric MA plot with no overall trend
1 day ago Michael Love 42k
0
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1
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440
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
1 day ago Michael Love 42k
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48
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Comment: Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
1 day ago Michael Love 42k
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62
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Answer: Answer: normalization across different species for DESeq2 analysis
1 day ago Michael Love 42k
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
1 day ago Michael Love 42k
0
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1
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440
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Answer: Answer: Can I trust the differential expression analysis when the two groups overlap on
2 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
2 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
5 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
6 days ago Michael Love 42k
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0
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
6 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
7 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
9 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
9 days ago Michael Love 42k
3
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0
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139
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Answer: Answer: How to save the DEXSeq results
9 days ago Michael Love 42k
2
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0
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133
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Answer: Answer: Trim/Filter out-of-bounds GRanges
9 days ago Michael Love 42k
0
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0
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207
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Comment: Comment: Couldn't connect to server while using "pathways"
9 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
10 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
10 days ago Michael Love 42k
0
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0
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179
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Answer: Answer: Handling multiple differential expression comparisons
10 days ago Michael Love 42k
1
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0
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247
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Comment: Comment: Too many significant genes when integrating gtex and tcga
12 days ago Michael Love 42k
0
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0
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156
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Answer: Answer: DESeq2 v1.35.0
13 days ago Michael Love 42k
0
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0
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298
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Comment: Comment: log2FoldChange value is way too different when compared with counts(dds)
14 days ago Michael Love 42k
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1
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298
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Answer: Answer: log2FoldChange value is way too different when compared with counts(dds)
14 days ago Michael Love 42k
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1
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2.5k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
15 days ago Michael Love 42k
1
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0
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149
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Answer: Answer: Fold change calculation in Diffbind vs. DESEQ2?
15 days ago Michael Love 42k
0
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1
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162
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Answer: Answer: Timecourse RNASeq analysis
15 days ago Michael Love 42k
0
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0
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135
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Answer: Answer: Padj "NA" with thousands of low count although the raw read counts are quite lar
15 days ago Michael Love 42k
0
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0
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224
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Answer: Answer: PCA plot suggestions
19 days ago Michael Love 42k
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0
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249
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Answer: Answer: Deseq2. decontXcounts not integers. Useful alternative?
19 days ago Michael Love 42k
0
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0
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164
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Answer: Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
21 days ago Michael Love 42k
1
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0
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232
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Comment: Comment: Different Shrunk Log2FC according with reference
21 days ago Michael Love 42k
2
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0
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327
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Answer: Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
22 days ago Michael Love 42k
0
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1
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2.5k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
22 days ago Michael Love 42k
1
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0
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247
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Comment: Comment: DESeq2 - dispersion estimation when there is none
22 days ago Michael Love 42k
2
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1
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247
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Answer: Answer: DESeq2 - dispersion estimation when there is none
23 days ago Michael Love 42k
0
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0
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444
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Comment: Comment: DESeq filtering specific to contrasts
26 days ago Michael Love 42k
0
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0
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786
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Comment: Comment: DESeq2 setting significant p-value
26 days ago Michael Love 42k
0
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1
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444
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Comment: Comment: DESeq filtering specific to contrasts
26 days ago Michael Love 42k
0
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1
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1.7k
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Comment: Comment: Which input file is used for DGEList in EgdeR?
26 days ago Michael Love 42k
0
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1
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2.5k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
26 days ago Michael Love 42k
0
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0
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290
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Comment: Comment: DEG with low counts
26 days ago Michael Love 42k
0
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1
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444
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Comment: Comment: DESeq filtering specific to contrasts
26 days ago Michael Love 42k
0
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0
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153
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Answer: Answer: rlog transformation
27 days ago Michael Love 42k
0
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0
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124
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Answer: Answer: ONT long-read RNA sequencing - data analysis options
27 days ago Michael Love 42k
0
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1
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734
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Answer: Answer: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
27 days ago Michael Love 42k
0
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0
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145
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Answer: Answer: covariate with negative and positive values
27 days ago Michael Love 42k
0
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1
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786
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Comment: Comment: DESeq2 setting significant p-value
27 days ago Michael Love 42k
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