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Answer: Answer: collapseReplicates dimension error
5 weeks ago Michael Love 41k
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226
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Answer: Answer: DESeq2 "Contrast" option
5 weeks ago Michael Love 41k
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300
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Comment: Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
5 weeks ago Michael Love 41k
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224
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Answer: Answer: Filtering and Reference Level for DESeq2
6 weeks ago Michael Love 41k
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300
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Answer: Answer: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
6 weeks ago Michael Love 41k
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257
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Answer: Answer: Help with Complex DESeq2 Design
6 weeks ago Michael Love 41k
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694
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Comment: Comment: DESeq2 unable to handle large count values
6 weeks ago Michael Love 41k
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173
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Answer: Answer: Need help with creating and plotting temporal clustering analysis of DEGs
6 weeks ago Michael Love 41k
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143
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Answer: Answer: Help with DESeqDataSetFromHTSeqCount
6 weeks ago Michael Love 41k
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179
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Answer: Answer: lfcShrink error: the line search routine failed
6 weeks ago Michael Love 41k
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262
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Answer: Answer: RNAseq analysis
6 weeks ago Michael Love 41k
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217
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Answer: Answer: With DESeq2 "Not full rank" Error with design
6 weeks ago Michael Love 41k
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414
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Comment: Comment: DESeq2: subtract effect of an isotope control before comparing to a baseline sam
6 weeks ago Michael Love 41k
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313
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Answer: Answer: Missing Band on Volcano Plot from DESeq2
6 weeks ago Michael Love 41k
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414
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Answer: Answer: DESeq2: subtract effect of an isotope control before comparing to a baseline sam
6 weeks ago Michael Love 41k
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424
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Comment: Comment: DESeq2 filtering vs edgeR filtering
7 weeks ago Michael Love 41k
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424
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Answer: Answer: DESeq2 filtering vs edgeR filtering
7 weeks ago Michael Love 41k
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1.1k
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Comment: Comment: Adding cell population estimates as a covariate in DESeq2 differential gene expr
7 weeks ago Michael Love 41k
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393
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Answer: Answer: Cross-species analysis - how to compute the mid parent value?
7 weeks ago Michael Love 41k
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327
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Answer: Answer: DESeq2: Comparing A Knockout to a Strain
7 weeks ago Michael Love 41k
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393
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Comment: Comment: DESeq and SVA for batch effect
7 weeks ago Michael Love 41k
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265
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Answer: Answer: DEseq2 dispersion plot
8 weeks ago Michael Love 41k
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316
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Answer: Answer: Dispersion estimation step is very slow with latest DESeq2 and glmGamPoi
8 weeks ago Michael Love 41k
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614
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Comment: Comment: DESEQ Inquiry
8 weeks ago Michael Love 41k
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679
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
9 weeks ago Michael Love 41k
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184
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Answer: Answer: few significant genes from DESeq2 analysis
9 weeks ago Michael Love 41k
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679
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
9 weeks ago Michael Love 41k
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1
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1.1k
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Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
9 weeks ago Michael Love 41k
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1
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679
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
9 weeks ago Michael Love 41k
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1
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614
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Comment: Comment: DESEQ Inquiry
9 weeks ago Michael Love 41k
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1
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679
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
9 weeks ago Michael Love 41k
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1
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1.1k
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Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
9 weeks ago Michael Love 41k
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1
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1.1k
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Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
9 weeks ago Michael Love 41k
1
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2
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428
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Answer: Answer: DEseq2 coefficient
9 weeks ago Michael Love 41k
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1
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614
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Answer: Answer: DESEQ Inquiry
9 weeks ago Michael Love 41k
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0
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257
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Answer: Answer: Limma Question
9 weeks ago Michael Love 41k
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679
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
9 weeks ago Michael Love 41k
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340
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Comment: Comment: library sizes differ extremely after dds
9 weeks ago Michael Love 41k
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1
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313
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Answer: Answer: evaluate the variable importance on genes
9 weeks ago Michael Love 41k
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340
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Answer: Answer: library sizes differ extremely after dds
9 weeks ago Michael Love 41k
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1
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1.1k
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Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
9 weeks ago Michael Love 41k
0
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1
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679
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
9 weeks ago Michael Love 41k
0
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1
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679
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Answer: Answer: Unexpected behavior of lfcShrink() function in DESeq2 analysis
9 weeks ago Michael Love 41k
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27k
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Comment: Comment: DESEq2 Paired samples Before and after treatment
9 weeks ago Michael Love 41k
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1.4k
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Comment: Comment: Normalizing Salmon output count data matrix using DESeq2
9 weeks ago Michael Love 41k
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330
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Comment: Comment: utf-8 codec can't decode byte 0xd5
9 weeks ago Michael Love 41k
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359
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Comment: Comment: vst transformation and zero counts
10 weeks ago Michael Love 41k
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359
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Answer: Answer: vst transformation and zero counts
10 weeks ago Michael Love 41k
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1.1k
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Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
10 weeks ago Michael Love 41k
0
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1
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1.1k
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Answer: Answer: How to calculate p value when comparing two sets of DEGs and not applying intera
10 weeks ago Michael Love 41k
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