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Answer: Answer: DESeq2 and determining effects of treatment on a priori/candidate genes from a b
5 months ago Michael Love 42k
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437
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Answer: Answer: DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort t
5 months ago Michael Love 42k
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642
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Answer: Answer: Can DESeq2 be used to compare groups of genes?
5 months ago Michael Love 42k
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522
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Answer: Answer: DESeq2 for microbiome data: raw counts or percentages?
6 months ago Michael Love 42k
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647
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Answer: Answer: tximeta errors: couldn't find matching transcriptome, returning non-ranged Summa
6 months ago Michael Love 42k
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393
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Answer: Answer: Swimming downstream: transcript fold changes
6 months ago Michael Love 42k
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732
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Answer: Answer: DESeq2 unable to handle large count values
6 months ago Michael Love 42k
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460
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Answer: Answer: DESeq2 model for two genome system
6 months ago Michael Love 42k
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389
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Answer: Answer: DESeq2: different results with and without releveling when providing contrast
6 months ago Michael Love 42k
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395
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Answer: Answer: Controling for Covariates With a Continuous Predictor Variable
6 months ago Michael Love 42k
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469
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Answer: Answer: Is my data too noisy for DESeq? Should I model noise as unwanted variation?
6 months ago Michael Love 42k
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840
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Answer: Answer: Quickly calculating adjusted Fold Change with DESeq2
6 months ago Michael Love 42k
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697
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Answer: Answer: Unable to replicate figures of CBCS data after nSolver and RUVSeq normalization
6 months ago Michael Love 42k
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661
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Answer: Answer: Will DESeq2 be appropriate tool for analysis?
7 months ago Michael Love 42k
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613
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Answer: Answer: DESeq2 Error in Results Contrast and ResultsNames
7 months ago Michael Love 42k
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1.1k
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Answer: Answer: DESeq2 gene length normalisation
7 months ago Michael Love 42k
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747
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Answer: Answer: DeSeq2 normalization 16S
7 months ago Michael Love 42k
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733
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Answer: Answer: DESeq2 : standardising variation between treatments
7 months ago Michael Love 42k
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431
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Answer: Answer: Issues with ddseq2 for treatment response factoring in different KO clones
7 months ago Michael Love 42k
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2.0k
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Answer: Answer: tximport error: vroom
7 months ago Michael Love 42k
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658
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Answer: Answer: Mixed up sample info with plotPCA
7 months ago Michael Love 42k
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724
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Answer: Answer: Deseq2 calculated log2foldchange not consistent with RPM in IP-small RNA-seq
7 months ago Michael Love 42k
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447
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Answer: Answer: Remove duplicates of colData in TreeSummarizedExperiment
7 months ago Michael Love 42k
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465
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Answer: Answer: how to adjust other conditions when calling DEGs by DESeq2
8 months ago Michael Love 42k
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892
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Answer: Answer: Permutation test in DESeq2?
8 months ago Michael Love 42k
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460
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Answer: Answer: Setting up a multi-factor experiement
8 months ago Michael Love 42k
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554
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Answer: Answer: DESeq design and contrast with multiple factors
8 months ago Michael Love 42k
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513
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Answer: Answer: Dramatically different DESeq2 results in Mac and Linux computers
8 months ago Michael Love 42k
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919
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Answer: Answer: Handle zero effective gene length when tximport RSEM results
8 months ago Michael Love 42k
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1.4k
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Answer: Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
8 months ago Michael Love 42k
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838
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Answer: Answer: Import Salmon data with tximport and pool technical replicates
8 months ago Michael Love 42k
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2
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864
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Answer: Answer: DESeq2: How to estimate effects of one factor controlling for other factors?
8 months ago Michael Love 42k
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878
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Answer: Answer: Error: insufficient numeric precision during Log fold change shrinkage with apeg
8 months ago Michael Love 42k
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487
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Answer: Answer: Comparing the effect of single drug and two-drug combination with control in RNA
9 months ago Michael Love 42k
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710
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Answer: Answer: DESeq2 batch design
9 months ago Michael Love 42k
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512
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Answer: Answer: DESeq2 interaction design
9 months ago Michael Love 42k
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573
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Answer: Answer: DESeq2 "Not full rank" and "Less than full rank" Errors with design ~ time + in
9 months ago Michael Love 42k
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649
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Answer: Answer: DESeq2 & RUVseq model matrix is less than full rank
9 months ago Michael Love 42k
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1.4k
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Answer: Answer: RNA seq differential expression analysis for large sample size
9 months ago Michael Love 42k
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351
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Answer: Answer: Using DEseq2 for two conditions with different dispersions
9 months ago Michael Love 42k
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540
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Answer: Answer: I changed the reference in DGE contrasts by DESeq2, but the results changed just
9 months ago Michael Love 42k
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732
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Answer: Answer: Deseq2 Results are different using batch design
9 months ago Michael Love 42k
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311
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Answer: Answer: Tximport - Is transcript level expression sum equal to summarisetogene() results
10 months ago Michael Love 42k
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672
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Answer: Answer: lfc direction of effect flipped for ashr, apeGLM, but accurate to biological dat
10 months ago Michael Love 42k
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836
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Answer: Answer: R could not could not find function "makeTxDbFromGFF" after loading (GenomicFeat
10 months ago Michael Love 42k
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1
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908
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Answer: Answer: DESeq2 not replicable results
10 months ago Michael Love 42k
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326
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Answer: Answer: Complex DESeq2 Experimental Design
10 months ago Michael Love 42k
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563
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Answer: Answer: p-value<0.05 for a gene with zero counts?
10 months ago Michael Love 42k
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1
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599
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Answer: Answer: Generating Random Genomic Ranges
10 months ago Michael Love 42k
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529
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Answer: Answer: DESeq2, Timecourse using fitted splines
10 months ago Michael Love 42k
3,660 results • Page 3 of 74
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