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Comment: Comment: Questions about the false positives indicated by DESeq2 and QQ plot
7 months ago Michael Love 42k
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1
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736
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Comment: Comment: DESeq2 : standardising variation between treatments
7 months ago Michael Love 42k
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0
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1.5k
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Comment: Comment: deseq2 pre filter rna seq
7 months ago Michael Love 42k
3
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3
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2.0k
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Comment: Comment: tximport error: vroom
7 months ago Michael Love 42k
1
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0
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659
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Comment: Comment: Mixed up sample info with plotPCA
7 months ago Michael Love 42k
0
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1
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659
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Comment: Comment: Mixed up sample info with plotPCA
7 months ago Michael Love 42k
1
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1
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724
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Comment: Comment: Deseq2 calculated log2foldchange not consistent with RPM in IP-small RNA-seq
7 months ago Michael Love 42k
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0
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818
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Comment: Comment: collapseReplicates error after tximeta
7 months ago Michael Love 42k
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1.4k
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Comment: Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
7 months ago Michael Love 42k
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1.4k
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Comment: Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
7 months ago Michael Love 42k
0
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1
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1.4k
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Comment: Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
7 months ago Michael Love 42k
1
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1
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1.4k
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Comment: Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
7 months ago Michael Love 42k
2
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0
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1.3k
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Comment: Comment: Differential expression analysis with only FPKM matrix available from total newb
8 months ago Michael Love 42k
1
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0
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892
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Comment: Comment: Permutation test in DESeq2?
8 months ago Michael Love 42k
0
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1
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892
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Comment: Comment: Permutation test in DESeq2?
8 months ago Michael Love 42k
0
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1
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892
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Comment: Comment: Permutation test in DESeq2?
8 months ago Michael Love 42k
0
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0
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1.2k
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Comment: Comment: RNAseq : identical sample-sample distances after using limma::removeBatchEffect
8 months ago Michael Love 42k
0
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1
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865
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Comment: Comment: DESeq2: How to estimate effects of one factor controlling for other factors?
8 months ago Michael Love 42k
1
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1
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574
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Comment: Comment: DESeq2 "Not full rank" and "Less than full rank" Errors with design ~ time + in
9 months ago Michael Love 42k
0
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0
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1.4k
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Comment: Comment: RNA seq differential expression analysis for large sample size
9 months ago Michael Love 42k
0
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1
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734
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Comment: Comment: Deseq2 Results are different using batch design
9 months ago Michael Love 42k
0
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1
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734
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Comment: Comment: Deseq2 Results are different using batch design
9 months ago Michael Love 42k
1
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0
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4.0k
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Comment: Comment: How to properly average normalized counts of biological replicates
9 months ago Michael Love 42k
0
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0
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1.6k
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Comment: Comment: News:Ensembl 110 has been released
10 months ago Michael Love 42k
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0
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673
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Comment: Comment: lfc direction of effect flipped for ashr, apeGLM, but accurate to biological dat
10 months ago Michael Love 42k
1
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0
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921
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Comment: Comment: Proper way to implement DESeq2 when comparing samples with trisomies?
10 months ago Michael Love 42k
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0
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1.4k
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Comment: Comment: DESeq2, time-course interpretation
10 months ago Michael Love 42k
0
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0
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2.8k
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Comment: Comment: tximport error: all(txId == raw[[txIdCol]]) is not TRUE
10 months ago Michael Love 42k
1
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0
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910
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Comment: Comment: DESeq2 not replicable results
10 months ago Michael Love 42k
0
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1
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910
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Comment: Comment: DESeq2 not replicable results
10 months ago Michael Love 42k
0
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1
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910
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Comment: Comment: DESeq2 not replicable results
10 months ago Michael Love 42k
0
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1
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910
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Comment: Comment: DESeq2 not replicable results
10 months ago Michael Love 42k
0
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0
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563
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Comment: Comment: p-value<0.05 for a gene with zero counts?
10 months ago Michael Love 42k
2
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1
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1.4k
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Comment: Comment: DESeq2, time-course interpretation
10 months ago Michael Love 42k
0
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1
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1.6k
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Comment: Comment: Whether to build DESeq2 model with all data and then contrast groups or subset g
10 months ago Michael Love 42k
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1
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1.6k
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Comment: Comment: Whether to build DESeq2 model with all data and then contrast groups or subset g
10 months ago Michael Love 42k
0
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0
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1.5k
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Comment: Comment: ranking the DeSeq2 results using t-values?
11 months ago Michael Love 42k
0
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0
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853
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Comment: Comment: Creating the right number/distribution of sequences in bootranges
11 months ago Michael Love 42k
0
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0
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853
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Comment: Comment: Creating the right number/distribution of sequences in bootranges
11 months ago Michael Love 42k
0
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1
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853
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Comment: Comment: Creating the right number/distribution of sequences in bootranges
11 months ago Michael Love 42k
0
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1
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834
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Comment: Comment: DESEq2 Error: rows did not converge
11 months ago Michael Love 42k
1
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1
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1.1k
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Comment: Comment: Fishpond/Swish Interaction Test Error
11 months ago Michael Love 42k
1
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1
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1.1k
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Comment: Comment: Fishpond/Swish Interaction Test Error
11 months ago Michael Love 42k
0
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0
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710
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Comment: Comment: Fishpond with unbalanced dataset
11 months ago Michael Love 42k
0
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2
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1.1k
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Comment: Comment: Fishpond/Swish Interaction Test Error
11 months ago Michael Love 42k
0
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1
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3.5k
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Comment: Comment: What causes this DESeq2 error at "fitting model and testing"?
11 months ago Michael Love 42k
0
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1
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3.5k
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Comment: Comment: What causes this DESeq2 error at "fitting model and testing"?
11 months ago Michael Love 42k
0
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0
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49k
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Comment: Comment: deseq2 filter the low counts
11 months ago Michael Love 42k
0
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1
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719
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Comment: Comment: Using different filtering steps in different iterations of DEseq2
11 months ago Michael Love 42k
1
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1
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1.1k
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Comment: Comment: Failure of beta estimates to converge in DESeq2 despite noncollinearity and reas
11 months ago Michael Love 42k
4,235 results • Page 3 of 85
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