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Answer:
Answer: Is it possible to convert transcript-level to gene-level dataset to use it in DE
15 months ago
Dario Strbenac
★ 1.5k
1
vote
1
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2.3k
views
Answer:
A: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
4.6 years ago
Dario Strbenac
★ 1.5k
2
votes
1
reply
998
views
Answer:
A: How can I overcome the error of "No residual degrees of freedom in linear model
4.8 years ago
Dario Strbenac
★ 1.5k
2
votes
0
replies
2.1k
views
Answer:
A: Difference in TCGA RNAseq expression values between GDC harmonized and legacy da
5.4 years ago
Dario Strbenac
★ 1.5k
2
votes
1
reply
1.1k
views
Answer:
A: Looking for code showing how estimateDispersions works.
5.7 years ago
Dario Strbenac
★ 1.5k
1
vote
0
replies
1.1k
views
Answer:
A: Cannot install AUCell 1.2.2
5.9 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
886
views
Answer:
A: Splicing analysis with ASpli
6.1 years ago
Dario Strbenac
★ 1.5k
2
votes
1
reply
1.7k
views
Answer:
A: No BAM option in readAligned from the ShortRead package
6.2 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
997
views
Answer:
A: RUVnormalize- How to output a corrected expression matrix without negative value
6.3 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.5k
views
Answer:
A: Changing SVM-Kernal in geNetClassifier function
6.5 years ago
Dario Strbenac
★ 1.5k
3
votes
1
reply
2.4k
views
Answer:
A: how to extract read alignments from reads aligning in mulitple locations
6.8 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.6k
views
Answer:
A: How to get treatment information with TCGAbiolinks?
6.9 years ago
Dario Strbenac
★ 1.5k
2
votes
1
reply
1.7k
views
Answer:
A: miRNA Probe IDs
7.5 years ago
Dario Strbenac
★ 1.5k
1
vote
0
replies
2.0k
views
Answer:
A: Comparison of Column of AnnotatedDataFrame
7.6 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.5k
views
Answer:
A: RNAseq outlier is a critical sample
7.9 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
2.2k
views
Answer:
A: Help with toGRanges
8.1 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
795
views
Answer:
A: Agilent cgh data read and normalized
8.1 years ago
Dario Strbenac
★ 1.5k
2
votes
1
reply
1.6k
views
Answer:
A: Bowtie % mapped reads for DGE
8.3 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.3k
views
Answer:
A: vcountPattern for Pattern Contained within or Containing Subject
8.5 years ago
Dario Strbenac
★ 1.5k
1
vote
1
reply
5.2k
views
Answer:
A: Can I use the WGCNA dendrogram to display a heatmap of gene expression?
9.0 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
3.4k
views
Answer:
A: Going crazy with normalizing TCGA raw rsem gene count
9.0 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.6k
views
Answer:
A: data preparation for timecourse
9.4 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
3.0k
views
Answer:
A: GFOLD file as input for DESeq2
9.6 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.1k
views
Answer:
A: Fwd: deepSNV error
9.7 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.1k
views
Answer:
A: deepSNV error
9.7 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
12k
views
Answer:
A: RNA-Seq, generate batch-free count matrix
9.8 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.6k
views
Answer:
A: deepSNV Question
9.8 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.6k
views
Answer:
A: deepSNV Question
9.8 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
929
views
Answer:
A: blast nt seq vs protein seq
9.8 years ago
Dario Strbenac
★ 1.5k
1
vote
0
replies
2.1k
views
Answer:
A: limma contrast matrix interaction effect
10.2 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
15k
views
Answer:
A: Limma design and contrast matrix question.
10.3 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
644
views
Answer:
A: Multi-level experiments
10.3 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.2k
views
Answer:
A: RNA-Seq fold change compared to control, without replicates
10.4 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
2.0k
views
Answer:
A: Graph of methylation data around TSS - Repitools or other package?
10.4 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
2.5k
views
Answer:
A: Problem with importing bigWig file from GEO with rtracklayer?
10.7 years ago
Dario Strbenac
★ 1.5k
1
vote
0
replies
1.1k
views
Answer:
A: TopGO 0 nontrivial nodes
10.8 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
3.2k
views
Answer:
A: Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : lin
11.0 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.5k
views
Answer:
A: need help for the study design of a RNA-Seq project
11.0 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
2.3k
views
Answer:
A: Transformation of Grange object to density per bin
11.3 years ago
Dario Strbenac
★ 1.5k
0
votes
3
replies
6.6k
views
Answer:
A: BAM files to Genomic Ranges object
11.3 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
6.6k
views
Answer:
A: BAM files to Genomic Ranges object
11.3 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
6.6k
views
Answer:
A: BAM files to Genomic Ranges object
11.3 years ago
Dario Strbenac
★ 1.5k
0
votes
2
replies
751
views
Answer:
A: GenomicFeatures Reading GFF Efficiency
11.4 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
972
views
Answer:
A: GenomicFeatures Transcripts Retrieval Fails
11.5 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
972
views
Answer:
A: GenomicFeatures Transcripts Retrieval Fails
11.5 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
943
views
Answer:
A: what difference to use edgeR in two different mode?
11.6 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
690
views
Answer:
A: readPositonalinfo
11.7 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
3.5k
views
Answer:
A: GRanges Constructor With seqlengths
11.9 years ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
862
views
Answer:
A: Create A Stranded probeAnno Object
11.9 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
862
views
Answer:
A: Create A Stranded probeAnno Object
11.9 years ago
Dario Strbenac
★ 1.5k
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