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Answer: Answer: Is it possible to convert transcript-level to gene-level dataset to use it in DE
16 months ago Dario Strbenac ★ 1.5k
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2.6k
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Answer: A: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
4.6 years ago Dario Strbenac ★ 1.5k
2
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1
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1.0k
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Answer: A: How can I overcome the error of "No residual degrees of freedom in linear model
4.9 years ago Dario Strbenac ★ 1.5k
2
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0
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2.2k
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Answer: A: Difference in TCGA RNAseq expression values between GDC harmonized and legacy da
5.5 years ago Dario Strbenac ★ 1.5k
2
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1
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1.1k
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Answer: A: Looking for code showing how estimateDispersions works.
5.8 years ago Dario Strbenac ★ 1.5k
1
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0
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1.1k
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Answer: A: Cannot install AUCell 1.2.2
6.0 years ago Dario Strbenac ★ 1.5k
0
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0
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909
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Answer: A: Splicing analysis with ASpli
6.2 years ago Dario Strbenac ★ 1.5k
2
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1
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1.7k
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Answer: A: No BAM option in readAligned from the ShortRead package
6.3 years ago Dario Strbenac ★ 1.5k
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1
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1.0k
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Answer: A: RUVnormalize- How to output a corrected expression matrix without negative value
6.4 years ago Dario Strbenac ★ 1.5k
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1
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1.5k
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Answer: A: Changing SVM-Kernal in geNetClassifier function
6.5 years ago Dario Strbenac ★ 1.5k
3
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1
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2.4k
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Answer: A: how to extract read alignments from reads aligning in mulitple locations
6.9 years ago Dario Strbenac ★ 1.5k
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0
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1.6k
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Answer: A: How to get treatment information with TCGAbiolinks?
6.9 years ago Dario Strbenac ★ 1.5k
2
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1
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1.7k
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Answer: A: miRNA Probe IDs
7.6 years ago Dario Strbenac ★ 1.5k
1
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0
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2.0k
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Answer: A: Comparison of Column of AnnotatedDataFrame
7.6 years ago Dario Strbenac ★ 1.5k
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0
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1.5k
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Answer: A: RNAseq outlier is a critical sample
7.9 years ago Dario Strbenac ★ 1.5k
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0
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2.2k
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Answer: A: Help with toGRanges
8.1 years ago Dario Strbenac ★ 1.5k
0
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1
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806
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Answer: A: Agilent cgh data read and normalized
8.1 years ago Dario Strbenac ★ 1.5k
2
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1
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1.6k
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Answer: A: Bowtie % mapped reads for DGE
8.3 years ago Dario Strbenac ★ 1.5k
0
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1
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1.3k
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Answer: A: vcountPattern for Pattern Contained within or Containing Subject
8.5 years ago Dario Strbenac ★ 1.5k
1
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1
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5.3k
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Answer: A: Can I use the WGCNA dendrogram to display a heatmap of gene expression?
9.0 years ago Dario Strbenac ★ 1.5k
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0
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3.5k
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Answer: A: Going crazy with normalizing TCGA raw rsem gene count
9.1 years ago Dario Strbenac ★ 1.5k
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0
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1.6k
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Answer: A: data preparation for timecourse
9.5 years ago Dario Strbenac ★ 1.5k
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0
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3.1k
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Answer: A: GFOLD file as input for DESeq2
9.7 years ago Dario Strbenac ★ 1.5k
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0
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1.2k
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Answer: A: Fwd: deepSNV error
9.8 years ago Dario Strbenac ★ 1.5k
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0
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1.1k
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Answer: A: deepSNV error
9.8 years ago Dario Strbenac ★ 1.5k
0
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0
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12k
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Answer: A: RNA-Seq, generate batch-free count matrix
9.8 years ago Dario Strbenac ★ 1.5k
0
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0
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1.7k
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Answer: A: deepSNV Question
9.8 years ago Dario Strbenac ★ 1.5k
0
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1
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1.7k
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Answer: A: deepSNV Question
9.9 years ago Dario Strbenac ★ 1.5k
0
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0
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940
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Answer: A: blast nt seq vs protein seq
9.9 years ago Dario Strbenac ★ 1.5k
1
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0
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2.1k
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Answer: A: limma contrast matrix interaction effect
10.2 years ago Dario Strbenac ★ 1.5k
0
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1
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15k
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Answer: A: Limma design and contrast matrix question.
10.3 years ago Dario Strbenac ★ 1.5k
0
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0
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653
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Answer: A: Multi-level experiments
10.4 years ago Dario Strbenac ★ 1.5k
0
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0
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1.2k
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Answer: A: RNA-Seq fold change compared to control, without replicates
10.4 years ago Dario Strbenac ★ 1.5k
0
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1
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2.1k
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Answer: A: Graph of methylation data around TSS - Repitools or other package?
10.5 years ago Dario Strbenac ★ 1.5k
0
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0
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2.6k
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Answer: A: Problem with importing bigWig file from GEO with rtracklayer?
10.8 years ago Dario Strbenac ★ 1.5k
1
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0
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1.1k
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Answer: A: TopGO 0 nontrivial nodes
10.8 years ago Dario Strbenac ★ 1.5k
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0
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3.3k
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Answer: A: Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : lin
11.1 years ago Dario Strbenac ★ 1.5k
0
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1
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1.5k
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Answer: A: need help for the study design of a RNA-Seq project
11.1 years ago Dario Strbenac ★ 1.5k
0
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1
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2.3k
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Answer: A: Transformation of Grange object to density per bin
11.3 years ago Dario Strbenac ★ 1.5k
0
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3
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6.6k
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Answer: A: BAM files to Genomic Ranges object
11.3 years ago Dario Strbenac ★ 1.5k
0
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1
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6.6k
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Answer: A: BAM files to Genomic Ranges object
11.4 years ago Dario Strbenac ★ 1.5k
0
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1
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6.6k
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Answer: A: BAM files to Genomic Ranges object
11.4 years ago Dario Strbenac ★ 1.5k
0
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2
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764
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Answer: A: GenomicFeatures Reading GFF Efficiency
11.5 years ago Dario Strbenac ★ 1.5k
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0
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982
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Answer: A: GenomicFeatures Transcripts Retrieval Fails
11.6 years ago Dario Strbenac ★ 1.5k
0
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1
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982
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Answer: A: GenomicFeatures Transcripts Retrieval Fails
11.6 years ago Dario Strbenac ★ 1.5k
0
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1
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951
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Answer: A: what difference to use edgeR in two different mode?
11.7 years ago Dario Strbenac ★ 1.5k
0
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0
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697
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Answer: A: readPositonalinfo
11.7 years ago Dario Strbenac ★ 1.5k
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0
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3.6k
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Answer: A: GRanges Constructor With seqlengths
12.0 years ago Dario Strbenac ★ 1.5k
0
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1
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875
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Answer: A: Create A Stranded probeAnno Object
12.0 years ago Dario Strbenac ★ 1.5k
0
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0
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875
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Answer: A: Create A Stranded probeAnno Object
12.0 years ago Dario Strbenac ★ 1.5k
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