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Comment: Comment: Rsubread - Error on buildindex - big ref sequence
4 months ago Yang Liao ▴ 380
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Comment: Comment: featureCounts (subread v2.0.2) ERROR: invalid parameter: '−−countReadPairs'
4 months ago Yang Liao ▴ 380
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400
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Answer: Answer: featureCounts bug with unpaired reads
4 months ago Yang Liao ▴ 380
1
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486
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Answer: Answer: Rsubread: subjunc() loads index repeatedly
4 months ago Yang Liao ▴ 380
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2.0k
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Comment: Comment: FeatureCounts output to SAM like htseq-counts?
5 months ago Yang Liao ▴ 380
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533
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Answer: Answer: Subread installation on Linux ARM64
10 months ago Yang Liao ▴ 380
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3.1k
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Comment: Comment: cellCounts() function floating point error
17 months ago Yang Liao ▴ 380
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1
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3.1k
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Comment: Comment: cellCounts() function floating point error
17 months ago Yang Liao ▴ 380
2
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1
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3.0k
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Comment: Comment: The low successful assignment ratio of FeatureCounts
19 months ago Yang Liao ▴ 380
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1
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1.2k
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Comment: Comment: Subread installation
20 months ago Yang Liao ▴ 380
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683
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Comment: Comment: segfault memory not mapped when using sortReadsByCoordinates = TRUE in Rsubread
21 months ago Yang Liao ▴ 380
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2.6k
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Comment: Comment: Error in Rsubread featureCounts
22 months ago Yang Liao ▴ 380
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1
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2.6k
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Comment: Comment: Error in Rsubread featureCounts
22 months ago Yang Liao ▴ 380
1
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1
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1.9k
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Comment: Comment: How to use subjunc for differential splicing analysis?
22 months ago Yang Liao ▴ 380
1
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1
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4.0k
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Comment: Comment: FeatureCounts
2.1 years ago Yang Liao ▴ 380
1
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1
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4.0k
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Comment: Comment: FeatureCounts
2.1 years ago Yang Liao ▴ 380
0
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1
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2.7k
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Comment: Comment: Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't hav
2.1 years ago Yang Liao ▴ 380
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1
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2.7k
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Comment: Comment: Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't hav
2.1 years ago Yang Liao ▴ 380
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1.4k
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Answer: Answer: Rsubread featureCounts segmentation fault with lots of read groups
2.1 years ago Yang Liao ▴ 380
0
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1
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2.7k
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Comment: Comment: Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't hav
2.1 years ago Yang Liao ▴ 380
0
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0
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2.0k
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Comment: Comment: "ERROR: cannot create temp file" when using buildindex from Rsubread
2.2 years ago Yang Liao ▴ 380
0
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1
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2.0k
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Comment: Comment: "ERROR: cannot create temp file" when using buildindex from Rsubread
2.2 years ago Yang Liao ▴ 380
0
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2
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3.9k
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Answer: Answer: featureCounts (subread v2.0.2) ERROR: invalid parameter: '−−countReadPairs'
2.4 years ago Yang Liao ▴ 380
0
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0
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1.9k
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Comment: Comment: Rsubread requests longread mode for shotgun RNAseq data
2.5 years ago Yang Liao ▴ 380
2
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1
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1.8k
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Answer: Answer: Rsubread issue with featurecounts :----------- FAILURE REPORT -------------- --
2.5 years ago Yang Liao ▴ 380
1
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0
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1.8k
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Comment: Comment: Rsubread issue with featurecounts :----------- FAILURE REPORT -------------- --
2.5 years ago Yang Liao ▴ 380
1
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1
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1.8k
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Comment: Comment: Rsubread issue with featurecounts :----------- FAILURE REPORT -------------- --
2.5 years ago Yang Liao ▴ 380
0
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0
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1.5k
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Comment: Comment: ERROR: cannot finish the BAM file. Please check the disk space in the output dir
2.7 years ago Yang Liao ▴ 380
0
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1
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1.5k
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Comment: Comment: ERROR: cannot finish the BAM file. Please check the disk space in the output dir
2.7 years ago Yang Liao ▴ 380
0
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0
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1.6k
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Answer: Answer: Error when loading annotation featureCounts
2.8 years ago Yang Liao ▴ 380
0
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1
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1.5k
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Comment: Comment: ERROR: cannot finish the BAM file. Please check the disk space in the output dir
2.8 years ago Yang Liao ▴ 380
0
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0
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5.2k
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Comment: Comment: Rsubread::featureCounts extremely slow on some annotations
3.0 years ago Yang Liao ▴ 380
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0
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5.2k
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Comment: Comment: Rsubread::featureCounts extremely slow on some annotations
3.0 years ago Yang Liao ▴ 380
0
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0
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1.5k
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Comment: Comment: Rsubread unable to return alignments
3.0 years ago Yang Liao ▴ 380
2
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1.3k
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Answer: A: featureCounts chrAliases not working as expected
3.6 years ago Yang Liao ▴ 380
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0
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1.3k
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Comment: C: featureCounts chrAliases not working as expected
3.6 years ago Yang Liao ▴ 380
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1
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1.3k
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Comment: C: featureCounts chrAliases not working as expected
3.6 years ago Yang Liao ▴ 380
0
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1
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1.5k
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Answer: A: Rsubread - Error on buildindex - big ref sequence
3.7 years ago Yang Liao ▴ 380
0
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0
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1.5k
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Comment: C: Rsubread - Error on buildindex - big ref sequence
3.7 years ago Yang Liao ▴ 380
0
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1
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3.1k
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Comment: C: ERROR: failed to find the gene identifier attribute in the 9th column of the pro
3.7 years ago Yang Liao ▴ 380
0
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1
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1.1k
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Comment: C: segfault "memory not mapped" using align from Rsubread
3.7 years ago Yang Liao ▴ 380
1
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0
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1.2k
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Answer: A: negative one "-1" values in index files using Rsubread
3.7 years ago Yang Liao ▴ 380
0
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1
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1.2k
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Comment: C: negative one "-1" values in index files using Rsubread
3.7 years ago Yang Liao ▴ 380
2
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1
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2.2k
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Answer: A: featureCount error - cannot identify gene_id
4.0 years ago Yang Liao ▴ 380
4
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0
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1.5k
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Answer: A: Rsubread malloc(): memory corruption
4.1 years ago Yang Liao ▴ 380
1
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1.5k
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Comment: C: Rsubread malloc(): memory corruption
4.1 years ago Yang Liao ▴ 380
0
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1.9k
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Comment: C: Rsubread requests longread mode for shotgun RNAseq data
4.2 years ago Yang Liao ▴ 380
2
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2
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1.9k
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Answer: A: Rsubread requests longread mode for shotgun RNAseq data
4.2 years ago Yang Liao ▴ 380
0
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1
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1.9k
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Comment: C: Rsubread requests longread mode for shotgun RNAseq data
4.2 years ago Yang Liao ▴ 380
0
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0
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2.4k
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Answer: A: Install Rsubread in win10, failed, how to proceed?
4.2 years ago Yang Liao ▴ 380
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