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0
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1.2k
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Comment:
Comment: Downloading count matrix for full recount3 dataset
10 days ago
Leonardo Collado Torres
★ 1.0k
1
vote
0
replies
159
views
Answer:
Answer: Transcript level expression for CCLE
8 weeks ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
467
views
Answer:
Answer: TCGA counts to TPM from recount3 do not seem to right
4 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
1.5k
views
Answer:
Answer: Recount3 error with default "recount3_url" option
10 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
745
views
Answer:
Answer: Recount3 data download problem
10 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
1.2k
views
Answer:
Answer: Unable to load data from duffel.rail
10 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
1.5k
views
Answer:
Answer: Not able to download recount3 data
10 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
633
views
Answer:
Answer: Cannot download data from IDIES links
10 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
711
views
Comment:
Comment: BigWig files provided by recount3
12 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
1
reply
711
views
Answer:
Answer: BigWig files provided by recount3
12 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
1.5k
views
Comment:
Comment: Not able to download recount3 data
13 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
1
reply
1.5k
views
Comment:
Comment: Not able to download recount3 data
13 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
882
views
Comment:
Comment: recount 3 protect read length metadata
14 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
882
views
Comment:
Comment: recount 3 protect read length metadata
14 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
633
views
Answer:
Answer: Cannot download data from IDIES links
14 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
2
replies
1.5k
views
Answer:
Answer: Not able to download recount3 data
14 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
1.2k
views
Answer:
Answer: Unable to load data from duffel.rail
14 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
745
views
Answer:
Answer: Recount3 data download problem
14 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
1.5k
views
Answer:
Answer: Recount3 error with default "recount3_url" option
14 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
1.5k
views
Answer:
Answer: Not able to download recount3 data
15 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
1
reply
882
views
Comment:
Comment: recount 3 protect read length metadata
15 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
1
reply
882
views
Answer:
Answer: recount 3 protect read length metadata
15 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
1.2k
views
Answer:
Answer: Unable to load data from duffel.rail
15 months ago
Leonardo Collado Torres
★ 1.0k
1
vote
0
replies
1.2k
views
Comment:
Comment: Unable to load data from duffel.rail
15 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
1
reply
1.2k
views
Comment:
Comment: Unable to load data from duffel.rail
15 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
702
views
Answer:
Answer: searching study metadata in recount3
17 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
2.2k
views
Comment:
Comment: Counts from recount3 for DESeq2 analysis
19 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
660
views
Answer:
Answer: recount3 transform_counts vs compute_read_counts
19 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
1.1k
views
Comment:
Comment: unable to install.packages("spatialLIBD")
19 months ago
Leonardo Collado Torres
★ 1.0k
1
vote
0
replies
654
views
Answer:
Answer: spot- vs cell-level data access
19 months ago
Leonardo Collado Torres
★ 1.0k
1
vote
0
replies
1.1k
views
Answer:
Answer: unable to install.packages("spatialLIBD")
19 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
1
reply
1.8k
views
Answer:
Answer: Create TPM gene tables/dataframe from ReCount3
22 months ago
Leonardo Collado Torres
★ 1.0k
1
vote
1
reply
2.2k
views
Comment:
Comment: Counts from recount3 for DESeq2 analysis
23 months ago
Leonardo Collado Torres
★ 1.0k
2
votes
1
reply
2.2k
views
Comment:
Comment: Counts from recount3 for DESeq2 analysis
23 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
1
reply
858
views
Answer:
Answer: Missing sample in recount3 data
24 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
825
views
Answer:
Answer: Retrieve the read counts per transcript instead of per gene
24 months ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
1.0k
views
Answer:
Answer: recount3 - download bigwig files for TCGA data
2.0 years ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
625
views
Answer:
Answer: Sample tissue annotation
2.1 years ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
819
views
Answer:
Answer: Distinguishing between single cell and bulk data in recount3 study explorer
2.1 years ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
579
views
Comment:
Comment: Link to download the annotations
2.1 years ago
Leonardo Collado Torres
★ 1.0k
0
votes
1
reply
1.4k
views
Answer:
Answer: Get read counts for TCGA samples via recount3
2.3 years ago
Leonardo Collado Torres
★ 1.0k
2
votes
0
replies
1.1k
views
Answer:
Answer: [recount3] Merge gene counts tables from multiple projects (SRP)
2.4 years ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
762
views
Answer:
Answer: Different read support for splice junctions using snapcount and recount3
2.4 years ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
1.9k
views
Comment:
Comment: rtracklayer: error in importing bigwig file in r in windows
2.5 years ago
Leonardo Collado Torres
★ 1.0k
1
vote
1
reply
1.1k
views
Comment:
Comment: derfinder model.matrix with limma or single base-level F-statistics analysis
2.7 years ago
Leonardo Collado Torres
★ 1.0k
2
votes
1
reply
1.1k
views
Answer:
Answer: derfinder model.matrix with limma or single base-level F-statistics analysis
2.7 years ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
718
views
Comment:
Comment: Annotations do not load in shiny app
2.7 years ago
Leonardo Collado Torres
★ 1.0k
2
votes
2
replies
1.2k
views
Answer:
Answer: Downloading count matrix for full recount3 dataset
2.7 years ago
Leonardo Collado Torres
★ 1.0k
0
votes
0
replies
1.6k
views
Comment:
Comment: Correlation analyses on TCGA data
2.8 years ago
Leonardo Collado Torres
★ 1.0k
0
votes
1
reply
1.0k
views
Answer:
Answer: recount3: advice for working with an unannotated genes
2.8 years ago
Leonardo Collado Torres
★ 1.0k
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