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Comment: Comment: RNA-seq read simulation for benchmarking differential expression/splicing varian
4.1 years ago Alyssa Frazee ▴ 210
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Answer: A: Error loading sample and control data using Ballgown due to different i_id in i_
4.3 years ago Alyssa Frazee ▴ 210
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Comment: C: Multiple pairwise comparisons in ballgown
5.3 years ago Alyssa Frazee ▴ 210
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Answer: A: Ballgown Error .null(pData) | class(pData) == "data.frame" are not all TRUE
5.9 years ago Alyssa Frazee ▴ 210
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Comment: C: Ballgown differential expression by exon problem
6.3 years ago Alyssa Frazee ▴ 210
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Comment: C: DESeq2 vs Ballgown results
6.5 years ago Alyssa Frazee ▴ 210
2
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8.1k
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Answer: A: DESeq2 vs Ballgown results
6.8 years ago Alyssa Frazee ▴ 210
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1.9k
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Answer: A: error reading ballgown object
6.9 years ago Alyssa Frazee ▴ 210
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2.7k
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Comment: C: Error in stattest function
6.9 years ago Alyssa Frazee ▴ 210
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2.7k
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Answer: A: Error in stattest function
6.9 years ago Alyssa Frazee ▴ 210
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2.9k
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Answer: A: Multiple pairwise comparisons in ballgown
6.9 years ago Alyssa Frazee ▴ 210
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1.8k
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Answer: A: Error in reading ballgown object
6.9 years ago Alyssa Frazee ▴ 210
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Answer: A: How to simulate a count matrix using Polyester
7.0 years ago Alyssa Frazee ▴ 210
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Answer: A: Handling both technical and biological replicates in Ballgown
7.1 years ago Alyssa Frazee ▴ 210
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Answer: A: Handling both technical and biological replicates in Ballgown
7.1 years ago Alyssa Frazee ▴ 210
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Comment: C: ballgown custom models
7.1 years ago Alyssa Frazee ▴ 210
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Answer: A: Ballgown with replicates and the adjustvars option
7.1 years ago Alyssa Frazee ▴ 210
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Answer: A: Ballgown Error in file(file, "rt") : invalid 'description' argument
7.3 years ago Alyssa Frazee ▴ 210
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Answer: A: limma regularization on Ballgown
7.5 years ago Alyssa Frazee ▴ 210
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Comment: C: The common error with ballgown has not been solved!
7.8 years ago Alyssa Frazee ▴ 210
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4.2k
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Comment: C: The common error with ballgown has not been solved!
7.8 years ago Alyssa Frazee ▴ 210
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4.2k
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Comment: C: The common error with ballgown has not been solved!
7.9 years ago Alyssa Frazee ▴ 210
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Comment: C: IRanges error loading rsem data into ballgown
7.9 years ago Alyssa Frazee ▴ 210
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3.8k
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Comment: C: How fold change is calculated in Ballgown?
7.9 years ago Alyssa Frazee ▴ 210
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2.5k
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Answer: A: HISAT-StringTie-Ballgown, order of biological replicates in script design
8.0 years ago Alyssa Frazee ▴ 210
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3
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3.8k
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Answer: A: How fold change is calculated in Ballgown?
8.0 years ago Alyssa Frazee ▴ 210
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Comment: C: Error in ball gown command
8.0 years ago Alyssa Frazee ▴ 210
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4.3k
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Answer: A: processing data with 2 rep or one replicate by ballgown
8.2 years ago Alyssa Frazee ▴ 210
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4.3k
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Answer: A: processing data with 2 rep or one replicate by ballgown
8.2 years ago Alyssa Frazee ▴ 210
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1.6k
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Answer: A: Interaction term analysis using ballgown
8.2 years ago Alyssa Frazee ▴ 210
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3.4k
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Comment: C: ballgown custom models
8.4 years ago Alyssa Frazee ▴ 210
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1.5k
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Comment: C: Polyester and mutations
8.4 years ago Alyssa Frazee ▴ 210
2
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1.6k
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Answer: A: polyester: adding noise to RNASeq counts?
8.5 years ago Alyssa Frazee ▴ 210
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0
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6.1k
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Answer: A: StringTie + Ballgown: handling biological replicates
8.7 years ago Alyssa Frazee ▴ 210
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2
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3.4k
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Answer: A: ballgown custom models
8.8 years ago Alyssa Frazee ▴ 210
1
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2
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6.1k
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Answer: A: StringTie + Ballgown: handling biological replicates
8.8 years ago Alyssa Frazee ▴ 210
2
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2
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7.4k
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Answer: A: Ballgown up and down regulated genes
8.9 years ago Alyssa Frazee ▴ 210
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2.0k
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Answer: A: Specifying a Default Model in Ballgown
9.5 years ago Alyssa Frazee ▴ 210
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7.5k
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Answer: A: Ballgown vs (voom,edgeR,DESeq,limma)
9.9 years ago Alyssa Frazee ▴ 210
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0
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1.5k
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Answer: A: readRNAMultipleAlignmen - filepath
10.3 years ago Alyssa Frazee ▴ 210
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