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Answer: Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
28 days ago Aaron Lun ★ 28k
2
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1
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607
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Answer: Answer: SingleR with multiple single cell references
10 weeks ago Aaron Lun ★ 28k
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0
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208
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Answer: Answer: Restricting differential binding analysis to only TSS-proximal regions
12 weeks ago Aaron Lun ★ 28k
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2
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788
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Answer: Answer: Csaw normalization strategies - general inquiry
3 months ago Aaron Lun ★ 28k
2
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1
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486
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Answer: Answer: Running multiple KNN queries in parallel
4 months ago Aaron Lun ★ 28k
1
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0
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848
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Comment: Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
4 months ago Aaron Lun ★ 28k
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848
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Comment: Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
4 months ago Aaron Lun ★ 28k
0
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0
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848
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Answer: Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
4 months ago Aaron Lun ★ 28k
1
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0
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1.6k
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Answer: Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
8 months ago Aaron Lun ★ 28k
0
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1
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565
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Answer: Answer: Reproducibility issue with scran together with lapply and BiocParallel
12 months ago Aaron Lun ★ 28k
2
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0
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724
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Answer: Answer: Bluster and Varieties of Louvain Clulstering
12 months ago Aaron Lun ★ 28k
1
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1
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1.3k
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Answer: Answer: Merging of Human and Mouse SingleCellExperiment Objects Error
15 months ago Aaron Lun ★ 28k
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0
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1.2k
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Answer: Answer: scran package: quickCluster and calculateSumFactors parallelization
15 months ago Aaron Lun ★ 28k
0
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2
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1.1k
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Answer: Answer: Cannot use findOverlaps with 2 GInteractions objects with different ranges.
15 months ago Aaron Lun ★ 28k
0
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3
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2.6k
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Answer: Answer: Support of parquet files for on-disk Bioconductor objects
19 months ago Aaron Lun ★ 28k
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0
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2.6k
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Comment: Comment: Support of parquet files for on-disk Bioconductor objects
19 months ago Aaron Lun ★ 28k
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2
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2.6k
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Comment: Comment: Support of parquet files for on-disk Bioconductor objects
19 months ago Aaron Lun ★ 28k
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0
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2.0k
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Answer: Answer: SingleR and gcc-8.3.0
2.1 years ago Aaron Lun ★ 28k
3
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2
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2.5k
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Answer: Answer: Efficiently working with HDF5-backed SingleCellExperiments
2.6 years ago Aaron Lun ★ 28k
1
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1
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1.1k
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Answer: Answer: How to detect LacZ tagged cells from single cell
2.6 years ago Aaron Lun ★ 28k
1
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1
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1.3k
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Comment: Comment: Summary of library size factor is all equal to one
2.6 years ago Aaron Lun ★ 28k
0
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1
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1.6k
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Answer: Answer: how to plot a fitting line on the testPseudotime
2.6 years ago Aaron Lun ★ 28k
1
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1
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3.7k
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Answer: Answer: `emptyDrops()` calling 'too many' non-empty droplets
2.7 years ago Aaron Lun ★ 28k
4
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1
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1.6k
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Answer: Answer: how to do downstram analysis to cells which are subsetted after MNN batch-correc
2.7 years ago Aaron Lun ★ 28k
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0
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2.7k
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Answer: Answer: how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more rea
2.7 years ago Aaron Lun ★ 28k
1
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1
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2.0k
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Comment: Comment: batchelor correctExperiments() returns Error in eval(subscript, envir = eframe,
2.8 years ago Aaron Lun ★ 28k
1
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1
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2.0k
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Answer: Answer: batchelor correctExperiments() returns Error in eval(subscript, envir = eframe,
2.9 years ago Aaron Lun ★ 28k
0
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0
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1.5k
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Comment: Comment: celldex error when downloading reference datasets
3.2 years ago Aaron Lun ★ 28k
1
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0
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900
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Answer: Answer: Input format for `combinations` in `hashedDrops`
3.3 years ago Aaron Lun ★ 28k
0
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0
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1.3k
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Answer: Answer: Using controlAmbience with multiple samples and conditions
3.3 years ago Aaron Lun ★ 28k
2
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1
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1.4k
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Answer: Answer: Block weights in scran::pairwiseTTests
3.4 years ago Aaron Lun ★ 28k
1
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0
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1.6k
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Answer: Answer: scran computeSumFactors showing error
3.4 years ago Aaron Lun ★ 28k
0
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0
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3.7k
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Comment: Comment: How to run runNMF in parallel?
3.4 years ago Aaron Lun ★ 28k
0
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0
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915
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Answer: Answer: CSAW Users Guide Ch 4-6 are not accessible/readable
3.5 years ago Aaron Lun ★ 28k
1
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1
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4.1k
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Comment: Comment: celldex ensembl gene annotation issue
3.5 years ago Aaron Lun ★ 28k
1
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1
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4.1k
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Answer: Answer: celldex ensembl gene annotation issue
3.5 years ago Aaron Lun ★ 28k
1
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1
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4.1k
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Comment: Comment: celldex ensembl gene annotation issue
3.5 years ago Aaron Lun ★ 28k
1
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1
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2.2k
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Answer: Answer: Ensuring reproducibility in BiocParallel SingleCellExperiment workflows
3.5 years ago Aaron Lun ★ 28k
0
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1
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3.7k
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Comment: Comment: How to run runNMF in parallel?
3.6 years ago Aaron Lun ★ 28k
2
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1
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1.4k
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Answer: Answer: Does MNN removes same average batch vector from all cells or each cell has it's
3.6 years ago Aaron Lun ★ 28k
0
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0
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1.5k
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Answer: Answer: Identify a scRNASeq cell-population using a bulk RNA Seq dataset of that populat
3.7 years ago Aaron Lun ★ 28k
0
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1
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1.5k
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Answer: Answer: Converting a GInteractions object to a dataframe
3.8 years ago Aaron Lun ★ 28k
2
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1
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1.2k
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Answer: Answer: diffHic's totalCounts fails with multiple files, but rest of test code works
3.8 years ago Aaron Lun ★ 28k
0
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1
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1.1k
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Answer: Answer: Can't normalize samples in diffHic
3.8 years ago Aaron Lun ★ 28k
2
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1
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1.9k
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Answer: Answer: scater::calculatePCA error when using BPPARAM = MulticoreParam
3.9 years ago Aaron Lun ★ 28k
1
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1
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1.7k
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Comment: Comment: could not duplicate the fragment length in "Reads to Regions" csaw tutorial
3.9 years ago Aaron Lun ★ 28k
1
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1
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1.8k
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Comment: Comment: DropletUtils::swappedDrops segfault memory not mapped
3.9 years ago Aaron Lun ★ 28k
0
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1
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1.8k
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Answer: Answer: DropletUtils::swappedDrops segfault memory not mapped
3.9 years ago Aaron Lun ★ 28k
2
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0
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1.4k
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Answer: Answer: barcodeRanks unusual warning "In smooth.spline(x[new.keep], y[new.keep], df = df
3.9 years ago Aaron Lun ★ 28k
1
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1
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1.7k
views
Answer: Answer: could not duplicate the fragment length in "Reads to Regions" csaw tutorial
4.0 years ago Aaron Lun ★ 28k
2,873 results • Page 1 of 58
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