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Comment: C: Limma design/contrast correct?
6.8 years ago Aaron Lun ★ 29k
3
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3.9k
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Answer: A: Limma design/contrast correct?
6.8 years ago Aaron Lun ★ 29k
1
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1
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4.3k
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Comment: C: LIMMA time series spline model.matrix design setup
6.8 years ago Aaron Lun ★ 29k
1
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1
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3.4k
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Answer: A: Silhouette Plots for Clustering Quality (Multiple Algorithm)
6.8 years ago Aaron Lun ★ 29k
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3.9k
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Comment: C: Limma design/contrast correct?
6.8 years ago Aaron Lun ★ 29k
1
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1
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3.7k
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Comment: C: Paired analysis setup using edgeR - follow up question
6.8 years ago Aaron Lun ★ 29k
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3
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4.3k
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Answer: A: LIMMA time series spline model.matrix design setup
6.8 years ago Aaron Lun ★ 29k
0
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0
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1.7k
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Comment: C: My linear regression model is giving me too many differentially expressed genes
6.8 years ago Aaron Lun ★ 29k
0
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1
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1.7k
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Comment: C: My linear regression model is giving me too many differentially expressed genes
6.8 years ago Aaron Lun ★ 29k
1
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1
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1.7k
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Answer: A: My linear regression model is giving me too many differentially expressed genes
6.8 years ago Aaron Lun ★ 29k
0
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1
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6.4k
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Comment: C: Limma time series spline help
6.8 years ago Aaron Lun ★ 29k
0
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1.7k
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Answer: A: SetMethod to dispatch on class in unattached package
6.8 years ago Aaron Lun ★ 29k
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2
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2.2k
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Answer: A: how can I calculate FDR with no replicate
6.8 years ago Aaron Lun ★ 29k
0
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1
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1.9k
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Answer: A: newSCESet(countData=all.counts) function not working
6.8 years ago Aaron Lun ★ 29k
1
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0
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2.4k
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Comment: C: How to best represent weights in SummarizedExperiment or SingleCellExperiment?
6.8 years ago Aaron Lun ★ 29k
2
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1
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2.5k
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Answer: A: Differential Expression Analysis in edgeR using Anova
6.8 years ago Aaron Lun ★ 29k
3
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2
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1.7k
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Answer: A: limma for getting DEGs from my own input matrix
6.8 years ago Aaron Lun ★ 29k
0
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0
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2.1k
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Comment: C: extracting scaffoldnames from HiC contact matrix
6.8 years ago Aaron Lun ★ 29k
0
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1
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2.1k
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Answer: A: extracting scaffoldnames from HiC contact matrix
6.8 years ago Aaron Lun ★ 29k
1
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0
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3.3k
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Comment: C: TopTable vs DecideTests: can I just extract DEs with decidetest rowsums !=0?
6.8 years ago Aaron Lun ★ 29k
1
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2
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3.7k
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Comment: C: Paired analysis setup using edgeR - follow up question
6.8 years ago Aaron Lun ★ 29k
1
vote
1
reply
3.3k
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Comment: C: TopTable vs DecideTests: can I just extract DEs with decidetest rowsums !=0?
6.9 years ago Aaron Lun ★ 29k
2
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1
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3.3k
views
Answer: A: TopTable vs DecideTests: can I just extract DEs with decidetest rowsums !=0?
6.9 years ago Aaron Lun ★ 29k
2
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1
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3.1k
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Answer: A: Average read counts and batch-effect correction in edgeR
6.9 years ago Aaron Lun ★ 29k
1
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1
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3.1k
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Comment: C: Average read counts and batch-effect correction in edgeR
6.9 years ago Aaron Lun ★ 29k
1
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1
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3.7k
views
Comment: C: Paired analysis setup using edgeR - follow up question
6.9 years ago Aaron Lun ★ 29k
1
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2
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3.7k
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Answer: A: Paired analysis setup using edgeR - follow up question
6.9 years ago Aaron Lun ★ 29k
1
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0
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5.5k
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Comment: C: DEseq2 for differential binding analysis ChIP seq
6.9 years ago Aaron Lun ★ 29k
0
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1
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5.5k
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Comment: C: DEseq2 for differential binding analysis ChIP seq
6.9 years ago Aaron Lun ★ 29k
2
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1
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2.8k
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Answer: A: Error in installation of scran
6.9 years ago Aaron Lun ★ 29k
1
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1
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1.8k
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Comment: C: plotPlatePosition and plate_position
6.9 years ago Aaron Lun ★ 29k
0
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1
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1.6k
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Answer: A: scran/scater Normalized matrix
6.9 years ago Aaron Lun ★ 29k
1
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1
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3.1k
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Comment: C: Help analyzing RNA-seq data from FPKM values with multiple time points
6.9 years ago Aaron Lun ★ 29k
1
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0
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1.7k
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Answer: A: gene counts in Seurat after RunCCA() and AlignSubspace()
6.9 years ago Aaron Lun ★ 29k
1
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1
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6.2k
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Comment: C: removing rows from SingleCellExperiment container
6.9 years ago Aaron Lun ★ 29k
1
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1
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1.8k
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Comment: C: about DropletUtils and scRNA-seq
6.9 years ago Aaron Lun ★ 29k
0
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0
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3.4k
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Comment: C: newSCESet and SingleCellExperiment basic differences and TMM Normalization
6.9 years ago Aaron Lun ★ 29k
0
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0
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5.0k
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Comment: C: Is lmFit() the fastest way to fit thousands of linear model in R and use what a
6.9 years ago Aaron Lun ★ 29k
0
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1
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1.8k
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Answer: A: about DropletUtils and scRNA-seq
6.9 years ago Aaron Lun ★ 29k
3
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2
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6.2k
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Answer: A: removing rows from SingleCellExperiment container
6.9 years ago Aaron Lun ★ 29k
0
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1
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1.5k
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Answer: A: Design matrix choice for time series experiment using limma
6.9 years ago Aaron Lun ★ 29k
0
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1
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6.2k
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Comment: C: removing rows from SingleCellExperiment container
6.9 years ago Aaron Lun ★ 29k
0
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0
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3.0k
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Comment: C: Odd P-value distribution in edgeR on RRBS data
6.9 years ago Aaron Lun ★ 29k
0
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1
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3.0k
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Comment: C: Odd P-value distribution in edgeR on RRBS data
6.9 years ago Aaron Lun ★ 29k
2
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1
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3.2k
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Comment: C: FDR does not change between genes in edgeR
6.9 years ago Aaron Lun ★ 29k
1
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0
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3.0k
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Answer: A: Odd P-value distribution in edgeR on RRBS data
6.9 years ago Aaron Lun ★ 29k
0
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1
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2.4k
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Comment: C: how to achieve reproducibility with BiocParallel regardless of number of threads
6.9 years ago Aaron Lun ★ 29k
3
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0
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3.2k
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Answer: A: FDR does not change between genes in edgeR
6.9 years ago Aaron Lun ★ 29k
0
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0
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2.4k
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Comment: C: how to achieve reproducibility with BiocParallel regardless of number of threads
6.9 years ago Aaron Lun ★ 29k
1
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0
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2.3k
views
Comment: C: scran: Are the log counts expression comparable among different genes within a s
6.9 years ago Aaron Lun ★ 29k
2,880 results • Page 10 of 58
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