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Answer: A: how to achieve reproducibility with BiocParallel regardless of number of threads
6.9 years ago Aaron Lun ★ 29k
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Comment: C: scran: Are the log counts expression comparable among different genes within a s
6.9 years ago Aaron Lun ★ 29k
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Answer: A: scran: Are the log counts expression comparable among different genes within a s
6.9 years ago Aaron Lun ★ 29k
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Answer: A: RNAseq analysis: what comes first, filtering or normalization
6.9 years ago Aaron Lun ★ 29k
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Comment: C: Help analyzing RNA-seq data from FPKM values with multiple time points
6.9 years ago Aaron Lun ★ 29k
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3.6k
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Comment: C: Gene ID to Gene Name/Symbol in loom files
6.9 years ago Aaron Lun ★ 29k
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5.5k
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Comment: C: DEseq2 for differential binding analysis ChIP seq
6.9 years ago Aaron Lun ★ 29k
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Answer: A: Gene ID to Gene Name/Symbol in loom files
6.9 years ago Aaron Lun ★ 29k
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Comment: C: How to resolve these trendVar() warnings and errors
6.9 years ago Aaron Lun ★ 29k
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2.5k
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Answer: A: Implications of TMM Normalization and Possible Alternatives
6.9 years ago Aaron Lun ★ 29k
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3.1k
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Comment: C: Help analyzing RNA-seq data from FPKM values with multiple time points
6.9 years ago Aaron Lun ★ 29k
1
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1
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3.1k
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Comment: C: Help analyzing RNA-seq data from FPKM values with multiple time points
6.9 years ago Aaron Lun ★ 29k
0
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1.5k
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Answer: A: Troubles with mzR and BiocInstaller
6.9 years ago Aaron Lun ★ 29k
1
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1.5k
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Answer: A: Different results from limma depending on whether or not I have an intercept ter
6.9 years ago Aaron Lun ★ 29k
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1.5k
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Answer: A: DropletUtils barcodeRanks bug (?)
6.9 years ago Aaron Lun ★ 29k
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3.1k
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Comment: C: Help analyzing RNA-seq data from FPKM values with multiple time points
6.9 years ago Aaron Lun ★ 29k
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2.3k
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Comment: C: from denove contig assembly to chromosome bins
6.9 years ago Aaron Lun ★ 29k
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1.7k
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Answer: A: EstimateDisp and glm
6.9 years ago Aaron Lun ★ 29k
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2.0k
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Comment: C: Normalization for small non-coding RNA and multi-factor design
6.9 years ago Aaron Lun ★ 29k
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2.3k
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Comment: C: from denove contig assembly to chromosome bins
6.9 years ago Aaron Lun ★ 29k
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2.3k
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Comment: C: from denove contig assembly to chromosome bins
6.9 years ago Aaron Lun ★ 29k
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3.4k
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Answer: A: Question: Deconvolution Method in Seurat and convert from SingleCellExperiment
6.9 years ago Aaron Lun ★ 29k
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2.3k
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Comment: C: from denove contig assembly to chromosome bins
6.9 years ago Aaron Lun ★ 29k
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3.1k
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Answer: A: Help analyzing RNA-seq data from FPKM values with multiple time points
6.9 years ago Aaron Lun ★ 29k
0
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1.9k
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Comment: C: edgeR. Known cancer genes are not differentially expressed?
6.9 years ago Aaron Lun ★ 29k
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2.3k
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Answer: A: from denove contig assembly to chromosome bins
6.9 years ago Aaron Lun ★ 29k
1
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1
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1.5k
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Answer: A: How to resolve these trendVar() warnings and errors
6.9 years ago Aaron Lun ★ 29k
2
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1.7k
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Answer: A: Top variable features used by 'runPCA' in scater
6.9 years ago Aaron Lun ★ 29k
2
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1.8k
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Answer: A: plotPlatePosition and plate_position
6.9 years ago Aaron Lun ★ 29k
2
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1.9k
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Answer: A: edgeR. Known cancer genes are not differentially expressed?
7.0 years ago Aaron Lun ★ 29k
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3.9k
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Answer: A: Problem installing scater
7.0 years ago Aaron Lun ★ 29k
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2.9k
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Comment: C: Controlling numerical covariates: differential gene expression with limma voom
7.0 years ago Aaron Lun ★ 29k
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2.1k
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Comment: C: t-statistic from various limma-approaches does not follow the theoretical distri
7.0 years ago Aaron Lun ★ 29k
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1
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2.7k
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Comment: C: Limma Voom duplicateCorrelation Design
7.0 years ago Aaron Lun ★ 29k
2
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1.6k
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Answer: A: edgeR DE analysis: single group combined factors or GLM with interaction term
7.0 years ago Aaron Lun ★ 29k
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2.9k
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Comment: C: Controlling numerical covariates: differential gene expression with limma voom
7.0 years ago Aaron Lun ★ 29k
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4.7k
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Comment: C: edgeR paired samples with blocking
7.0 years ago Aaron Lun ★ 29k
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1
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2.1k
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Comment: C: t-statistic from various limma-approaches does not follow the theoretical distri
7.0 years ago Aaron Lun ★ 29k
1
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1
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2.4k
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Answer: A: [MnnCorrect] Remove batch effects but keep condition effects
7.0 years ago Aaron Lun ★ 29k
2
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2.1k
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Answer: A: t-statistic from various limma-approaches does not follow the theoretical distri
7.0 years ago Aaron Lun ★ 29k
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1.9k
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Comment: C: A problem with csaw that I don't think is a problem with csaw
7.0 years ago Aaron Lun ★ 29k
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1
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1.9k
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Comment: C: A problem with csaw that I don't think is a problem with csaw
7.0 years ago Aaron Lun ★ 29k
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1
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1.9k
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Comment: C: A problem with csaw that I don't think is a problem with csaw
7.0 years ago Aaron Lun ★ 29k
6
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1
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2.7k
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Answer: A: Limma Voom duplicateCorrelation Design
7.0 years ago Aaron Lun ★ 29k
0
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1
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1.9k
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Answer: A: A problem with csaw that I don't think is a problem with csaw
7.0 years ago Aaron Lun ★ 29k
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3.7k
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Comment: C: EdgeR RNAseq -- best way to deal with random effects
7.0 years ago Aaron Lun ★ 29k
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2.3k
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Comment: C: shRNA-Seq analysis using edgeR
7.0 years ago Aaron Lun ★ 29k
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2.3k
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Comment: C: shRNA-Seq analysis using edgeR
7.0 years ago Aaron Lun ★ 29k
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2.3k
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Comment: C: shRNA-Seq analysis using edgeR
7.0 years ago Aaron Lun ★ 29k
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4.7k
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Comment: C: edgeR paired samples with blocking
7.0 years ago Aaron Lun ★ 29k
2,880 results • Page 11 of 58
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