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Comment: C: edgeR: boxplot the expression of a gene in two conditions after glmFit
7.0 years ago Aaron Lun ★ 29k
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2.3k
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Comment: C: shRNA-Seq analysis using edgeR
7.0 years ago Aaron Lun ★ 29k
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4.7k
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Comment: C: edgeR paired samples with blocking
7.0 years ago Aaron Lun ★ 29k
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4.7k
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Answer: A: edgeR paired samples with blocking
7.0 years ago Aaron Lun ★ 29k
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2.6k
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Comment: C: edgeR: boxplot the expression of a gene in two conditions after glmFit
7.0 years ago Aaron Lun ★ 29k
1
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1
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2.6k
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Answer: A: edgeR: boxplot the expression of a gene in two conditions after glmFit
7.0 years ago Aaron Lun ★ 29k
1
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1
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2.5k
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Comment: C: Change the number of clusters with scater
7.0 years ago Aaron Lun ★ 29k
1
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2
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2.5k
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Answer: A: Change the number of clusters with scater
7.0 years ago Aaron Lun ★ 29k
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1
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3.7k
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Answer: A: EdgeR RNAseq -- best way to deal with random effects
7.0 years ago Aaron Lun ★ 29k
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1
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2.6k
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Answer: A: Please help with workspace error in R
7.0 years ago Aaron Lun ★ 29k
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1
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2.3k
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Answer: A: shRNA-Seq analysis using edgeR
7.0 years ago Aaron Lun ★ 29k
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4.1k
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Comment: C: edgeR package fails to load after install
7.0 years ago Aaron Lun ★ 29k
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2
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4.1k
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Comment: C: edgeR package fails to load after install
7.0 years ago Aaron Lun ★ 29k
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2.7k
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Comment: C: model matrix for edgeR paired-design with batch effect
7.0 years ago Aaron Lun ★ 29k
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1
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1.6k
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Comment: C: maintainer option for bioconductor packages
7.0 years ago Aaron Lun ★ 29k
2
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1
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2.8k
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Answer: A: Using LIMMA for differential gene analysis of microarray data
7.0 years ago Aaron Lun ★ 29k
3
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1.1k
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Answer: A: EdgeR applied to peptide screen: help!
7.0 years ago Aaron Lun ★ 29k
3
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1
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1.5k
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Answer: A: EdgeR - blocking for multiple factors at once - Errors
7.0 years ago Aaron Lun ★ 29k
5
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1
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3.4k
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Answer: A: limma-voom duplicateCorrelation once or twice, difference?
7.1 years ago Aaron Lun ★ 29k
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4.0k
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Comment: C: limma and intercept
7.1 years ago Aaron Lun ★ 29k
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4.0k
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Answer: A: limma and intercept
7.1 years ago Aaron Lun ★ 29k
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2.3k
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Comment: C: csaw spike-in normalization
7.1 years ago Aaron Lun ★ 29k
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2
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2.3k
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Answer: A: csaw spike-in normalization
7.1 years ago Aaron Lun ★ 29k
1
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4.1k
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Answer: A: edgeR package fails to load after install
7.1 years ago Aaron Lun ★ 29k
0
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1
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1.3k
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Comment: C: Predict circadian expression with edgeR
7.1 years ago Aaron Lun ★ 29k
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1.8k
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Comment: C: Multi-factor with interaction model in EdgeR and DESeq2
7.1 years ago Aaron Lun ★ 29k
2
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1
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1.3k
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Answer: A: Predict circadian expression with edgeR
7.1 years ago Aaron Lun ★ 29k
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1
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5.2k
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Comment: C: Limma Design Matrix for Paired Samples with Confouding Factors
7.1 years ago Aaron Lun ★ 29k
0
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1
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3.0k
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Comment: C: Differentiating between batch and treatment effects in edgeR, DESeq2
7.1 years ago Aaron Lun ★ 29k
0
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2
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5.2k
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Comment: C: Limma Design Matrix for Paired Samples with Confouding Factors
7.1 years ago Aaron Lun ★ 29k
0
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2
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5.2k
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Comment: C: Limma Design Matrix for Paired Samples with Confouding Factors
7.1 years ago Aaron Lun ★ 29k
0
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1
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1.1k
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Answer: A: Pre-processing for diffHiC
7.1 years ago Aaron Lun ★ 29k
0
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1
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3.0k
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Comment: C: Differentiating between batch and treatment effects in edgeR, DESeq2
7.1 years ago Aaron Lun ★ 29k
1
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2
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2.7k
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Answer: A: model matrix for edgeR paired-design with batch effect
7.1 years ago Aaron Lun ★ 29k
1
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0
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1.4k
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Answer: A: genes repeated in the heatmap several times(10x) when using limma
7.1 years ago Aaron Lun ★ 29k
1
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1
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933
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Answer: A: Dispersion & FDR in edgeR
7.1 years ago Aaron Lun ★ 29k
0
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1
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3.0k
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Comment: C: Differentiating between batch and treatment effects in edgeR, DESeq2
7.1 years ago Aaron Lun ★ 29k
2
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0
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1.1k
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Answer: A: Is it ok to use decideTests on linearly dependent contrasts?
7.1 years ago Aaron Lun ★ 29k
0
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2
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5.2k
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Answer: A: Limma Design Matrix for Paired Samples with Confouding Factors
7.1 years ago Aaron Lun ★ 29k
2
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2
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3.0k
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Answer: A: Differentiating between batch and treatment effects in edgeR, DESeq2
7.1 years ago Aaron Lun ★ 29k
0
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0
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2.8k
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Comment: C: correction for batch effects and paired-design of RNA-seq samples
7.1 years ago Aaron Lun ★ 29k
0
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0
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957
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Answer: A: Help with EdgeR R code - RNA-Seq Differental Gene Expression
7.1 years ago Aaron Lun ★ 29k
1
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0
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1.3k
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Comment: C: Newbie to all of this
7.1 years ago Aaron Lun ★ 29k
1
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1
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1.6k
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Answer: A: cohen's d in edgeR
7.1 years ago Aaron Lun ★ 29k
2
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1
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2.7k
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Answer: A: limma barcodeplot(): calculation of enrichment score
7.1 years ago Aaron Lun ★ 29k
0
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1
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1.9k
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Answer: A: Queries related to limma package based analysis of masspectrometry data
7.1 years ago Aaron Lun ★ 29k
7
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1
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3.6k
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Answer: A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
updated 7.1 years ago by ★ 13k • written 7.1 years ago by ★ 29k
3
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1
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1.6k
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Answer: A: How to calculate average log2 CPM with batch effect?
7.1 years ago Aaron Lun ★ 29k
0
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1
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3.4k
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Comment: C: newSCESet and SingleCellExperiment basic differences and TMM Normalization
7.1 years ago Aaron Lun ★ 29k
2
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1
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3.4k
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Comment: C: edgeR compilation error: with g++ 4.9.2 and R-5.0 on linux platform
7.1 years ago Aaron Lun ★ 29k
2,880 results • Page 12 of 58
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