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Answer: A: newSCESet and SingleCellExperiment basic differences and TMM Normalization
7.1 years ago Aaron Lun ★ 29k
2
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Comment: C: nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
7.1 years ago Aaron Lun ★ 29k
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7.3k
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Comment: C: Batch correction when only some subjects have replicates across batches
7.1 years ago Aaron Lun ★ 29k
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7.3k
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Comment: C: Batch correction when only some subjects have replicates across batches
7.1 years ago Aaron Lun ★ 29k
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2.1k
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Comment: C: Design and Contrast Matrix for Linear Model. To Combine or not to Combine?
7.1 years ago Aaron Lun ★ 29k
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7.3k
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Answer: A: Batch correction when only some subjects have replicates across batches
7.1 years ago Aaron Lun ★ 29k
2
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1.3k
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Answer: A: use only lib size as normalizing factor in edgeR
7.2 years ago Aaron Lun ★ 29k
2
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1.2k
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Answer: A: Correct formulation of contrasts of interest regarding an RNA-Seq gene expressio
7.2 years ago Aaron Lun ★ 29k
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Comment: C: Incorporating subject ID as random effect for repeated measures RNA-Seq analysis
7.2 years ago Aaron Lun ★ 29k
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3.5k
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Answer: A: time series, block by patient, between and within comparisons limma-voom
7.2 years ago Aaron Lun ★ 29k
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1.3k
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Answer: A: Unusual graph for Identifying HVGs from the normalized log-expression
7.2 years ago Aaron Lun ★ 29k
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1
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2.5k
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Comment: C: Limma: The log2FC of topTable is not equal to Mean(log2CPM) of Basal - Mean(log2
7.2 years ago Aaron Lun ★ 29k
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1.4k
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Answer: A: Limma analysis combining twins pairs and unpaired controls
7.2 years ago Aaron Lun ★ 29k
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2.8k
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Comment: C: EdgeR analysis batch effect
7.2 years ago Aaron Lun ★ 29k
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2.9k
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Comment: C: why the p value and FDR is different between classic exactTest and glm glmQLFTes
7.2 years ago Aaron Lun ★ 29k
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1
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2.5k
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Comment: C: Limma: The log2FC of topTable is not equal to Mean(log2CPM) of Basal - Mean(log2
7.2 years ago Aaron Lun ★ 29k
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2.4k
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Comment: C: limma Multi-level Experiments correcting for continuous covariates
7.2 years ago Aaron Lun ★ 29k
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2
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3.6k
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Comment: C: EdgeR vs DESeq2 with/without lfcShrink
7.2 years ago Aaron Lun ★ 29k
6
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4
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2.7k
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Answer: A: Confounded design, batch effect correction (edgeR)
7.2 years ago Aaron Lun ★ 29k
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3.5k
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Comment: C: time series, block by patient, between and within comparisons limma-voom
7.2 years ago Aaron Lun ★ 29k
2
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2
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2.5k
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Answer: A: Limma: The log2FC of topTable is not equal to Mean(log2CPM) of Basal - Mean(log2
7.2 years ago Aaron Lun ★ 29k
0
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1
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2.4k
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Comment: C: limma Multi-level Experiments correcting for continuous covariates
7.2 years ago Aaron Lun ★ 29k
2
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2
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2.8k
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Answer: A: EdgeR analysis batch effect
7.2 years ago Aaron Lun ★ 29k
2
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1
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3.6k
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Answer: A: EdgeR vs DESeq2 with/without lfcShrink
7.2 years ago Aaron Lun ★ 29k
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1.8k
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Comment: C: CSAW ready to use R script
7.2 years ago Aaron Lun ★ 29k
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1.2k
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Answer: A: Gene set enrichment analysis with ChIP-seq data using test statistics directly
7.2 years ago Aaron Lun ★ 29k
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1
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2.4k
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Comment: C: limma Multi-level Experiments correcting for continuous covariates
7.2 years ago Aaron Lun ★ 29k
5
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2.4k
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Answer: A: limma Multi-level Experiments correcting for continuous covariates
7.2 years ago Aaron Lun ★ 29k
1
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1
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1.8k
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Answer: A: CSAW ready to use R script
7.2 years ago Aaron Lun ★ 29k
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1.8k
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Comment: C: How do I discern if a magnitude difference in expression is up-regulation in one
7.2 years ago Aaron Lun ★ 29k
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1
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1.8k
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Comment: C: How do I discern if a magnitude difference in expression is up-regulation in one
7.2 years ago Aaron Lun ★ 29k
3
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2.6k
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Answer: A: Limma example where one comparison gives different results depending on the matr
7.2 years ago Aaron Lun ★ 29k
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0
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1.8k
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Answer: A: Best csaw normalization approach for ATAC-seq data
7.2 years ago Aaron Lun ★ 29k
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1
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2.4k
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Comment: C: limma Multi-level Experiments correcting for continuous covariates
7.2 years ago Aaron Lun ★ 29k
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1.7k
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Comment: C: RNA-seq unbalanced batch effect correction
7.2 years ago Aaron Lun ★ 29k
3
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1
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1.6k
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Answer: A: Creating a correct limma model with respect to contrast matrix and design matrix
7.2 years ago Aaron Lun ★ 29k
1
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1.9k
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Answer: A: Problem with finding mitochondrial genes in a human single cell RNA-Seq readCoun
7.2 years ago Aaron Lun ★ 29k
0
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1
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15k
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Comment: C: Limma LogFC hand calculation
7.2 years ago Aaron Lun ★ 29k
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4.3k
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Comment: C: Continuous variable interaction with Groups in design matrix
7.2 years ago Aaron Lun ★ 29k
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1.5k
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Comment: C: CNV-expression testing with edgeR
7.2 years ago Aaron Lun ★ 29k
1
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1
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1.5k
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Answer: A: How to spot genes/transcripts in a MA-plot
7.2 years ago Aaron Lun ★ 29k
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0
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2.0k
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Answer: A: extract HiC contacts for a given BEDPE set of coordinates
7.2 years ago Aaron Lun ★ 29k
0
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1
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3.9k
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Comment: C: Error in glmFit.default() : y is not a numeric matrix
7.2 years ago Aaron Lun ★ 29k
4
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1.5k
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Answer: A: CNV-expression testing with edgeR
7.2 years ago Aaron Lun ★ 29k
0
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1
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3.9k
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Comment: C: Error in glmFit.default() : y is not a numeric matrix
7.2 years ago Aaron Lun ★ 29k
1
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1
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3.9k
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Comment: C: Error in glmFit.default() : y is not a numeric matrix
7.2 years ago Aaron Lun ★ 29k
0
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1
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3.9k
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Comment: C: Error in glmFit.default() : y is not a numeric matrix
7.2 years ago Aaron Lun ★ 29k
0
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1
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3.9k
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Comment: C: Error in glmFit.default() : y is not a numeric matrix
7.2 years ago Aaron Lun ★ 29k
0
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1
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3.9k
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Comment: C: Error in glmFit.default() : y is not a numeric matrix
7.2 years ago Aaron Lun ★ 29k
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2
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3.9k
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Answer: A: Error in glmFit.default() : y is not a numeric matrix
7.2 years ago Aaron Lun ★ 29k
2,880 results • Page 13 of 58
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