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Comment: C: keep getting this error "number of rows is not the same across batches" even tho
7.4 years ago Aaron Lun ★ 29k
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4.1k
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Comment: C: Robust transformation of raw RNA-seq counts for exploratory data analysis and hi
7.4 years ago Aaron Lun ★ 29k
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3.1k
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Comment: C: limma-voom WithQualityWeights and duplicateCorrelation in RNA-seq
7.4 years ago Aaron Lun ★ 29k
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3.1k
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Answer: A: limma-voom WithQualityWeights and duplicateCorrelation in RNA-seq
7.4 years ago Aaron Lun ★ 29k
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1.3k
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Answer: A: visualization of chromatin interaction networks
7.4 years ago Aaron Lun ★ 29k
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1.8k
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Comment: C: Differential ChIP-seq analysis
7.4 years ago Aaron Lun ★ 29k
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1.8k
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Answer: A: Differential ChIP-seq analysis
7.4 years ago Aaron Lun ★ 29k
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1.4k
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Answer: A: DE analysis when large portion of transcriptome is changed
7.4 years ago Aaron Lun ★ 29k
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3.9k
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Comment: C: Single cells batch effects
7.4 years ago Aaron Lun ★ 29k
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5.3k
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Comment: C: Merging RNAseq Datasets of Different Depths
7.4 years ago Aaron Lun ★ 29k
2
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1.7k
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Answer: A: Error to rename seqlevels in Granges interactions
7.4 years ago Aaron Lun ★ 29k
2
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1.2k
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Answer: A: Batch Variation-MDS Plot
7.4 years ago Aaron Lun ★ 29k
1
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1.2k
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Answer: A: Repeated measurements wtih limma
7.4 years ago Aaron Lun ★ 29k
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8.5k
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Comment: C: rowSums() rowMeans() don't work on sparse matrix "dgCMatrix"
7.4 years ago Aaron Lun ★ 29k
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1.4k
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Answer: A: Circumventing statistical non-significance on a triple interaction using edgeR
7.4 years ago Aaron Lun ★ 29k
1
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5.3k
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Comment: C: Merging RNAseq Datasets of Different Depths
7.4 years ago Aaron Lun ★ 29k
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2.1k
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Answer: A: edgeR: problem with the quasi-likelihood F-test
7.4 years ago Aaron Lun ★ 29k
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5.9k
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Comment: C: WARNING: remove set.seed usage in R code
7.4 years ago Aaron Lun ★ 29k
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1.7k
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Comment: C: edgeR - how to build design for matched case-control study with repeated measure
7.4 years ago Aaron Lun ★ 29k
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1.1k
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Comment: C: EdgeR analysis of bottlenecked genetic screen data
7.4 years ago Aaron Lun ★ 29k
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5.3k
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Comment: C: Merging RNAseq Datasets of Different Depths
7.4 years ago Aaron Lun ★ 29k
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1.1k
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Comment: C: EdgeR analysis of bottlenecked genetic screen data
7.4 years ago Aaron Lun ★ 29k
1
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1.7k
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Answer: A: edgeR - how to build design for matched case-control study with repeated measure
7.4 years ago Aaron Lun ★ 29k
1
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1
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1.1k
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Answer: A: EdgeR analysis of bottlenecked genetic screen data
7.4 years ago Aaron Lun ★ 29k
1
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1
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1.0k
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Answer: A: How to extract genes with greatest BCV?
7.4 years ago Aaron Lun ★ 29k
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1
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2.3k
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Comment: C: Building a biologically meaningful design matrix for limma/voom in a large RNASe
7.4 years ago Aaron Lun ★ 29k
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6.3k
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Comment: C: [limma] Define contrasts for model with covariates
7.4 years ago Aaron Lun ★ 29k
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1
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2.3k
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Comment: C: Building a biologically meaningful design matrix for limma/voom in a large RNASe
7.4 years ago Aaron Lun ★ 29k
1
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1
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5.3k
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Comment: C: Merging RNAseq Datasets of Different Depths
7.4 years ago Aaron Lun ★ 29k
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1
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13k
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Comment: C: EdgeR: Explaning dispersion types to newbies
7.4 years ago Aaron Lun ★ 29k
1
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1
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2.3k
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Answer: A: Building a biologically meaningful design matrix for limma/voom in a large RNASe
7.4 years ago Aaron Lun ★ 29k
0
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2
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13k
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Comment: C: EdgeR: Explaning dispersion types to newbies
7.4 years ago Aaron Lun ★ 29k
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1
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13k
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Comment: C: EdgeR: Explaning dispersion types to newbies
7.4 years ago Aaron Lun ★ 29k
0
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1
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13k
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Comment: C: EdgeR: Explaning dispersion types to newbies
7.4 years ago Aaron Lun ★ 29k
1
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2
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5.3k
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Answer: A: Merging RNAseq Datasets of Different Depths
7.4 years ago Aaron Lun ★ 29k
7
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2
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13k
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Answer: A: EdgeR: Explaning dispersion types to newbies
7.4 years ago Aaron Lun ★ 29k
0
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990
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Comment: C: edgeR: setting up proper contrasts for interactions
7.4 years ago Aaron Lun ★ 29k
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1
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2.7k
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Comment: C: Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
7.4 years ago Aaron Lun ★ 29k
3
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990
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Answer: A: edgeR: setting up proper contrasts for interactions
7.4 years ago Aaron Lun ★ 29k
2
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1
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4.2k
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Answer: A: Problem with annotating ENSEMBLE IDs to GENE SYMBOL with AnnotationDBI mapIDs
7.4 years ago Aaron Lun ★ 29k
1
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0
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7.6k
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Comment: C: Differentially expressed genes selection with FC and FDR cutoff
7.4 years ago Aaron Lun ★ 29k
1
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1
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7.6k
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Comment: C: Differentially expressed genes selection with FC and FDR cutoff
7.4 years ago Aaron Lun ★ 29k
0
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1
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7.6k
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Comment: C: Differentially expressed genes selection with FC and FDR cutoff
7.4 years ago Aaron Lun ★ 29k
1
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1
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7.6k
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Comment: C: Differentially expressed genes selection with FC and FDR cutoff
7.4 years ago Aaron Lun ★ 29k
0
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36k
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Comment: C: How does edgeR cpm function calculate log(CPM) values?
7.4 years ago Aaron Lun ★ 29k
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1.5k
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Answer: A: Problem with write.fit function
7.4 years ago Aaron Lun ★ 29k
1
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1.4k
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Answer: A: How to extract gene clusters (genes of similar pattern over time) once spline cu
7.4 years ago Aaron Lun ★ 29k
2
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1.2k
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Answer: A: EdgeR - How to set up the design matrix for a multifactorial experimental design
7.4 years ago Aaron Lun ★ 29k
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4.0k
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Comment: C: How to use diffHiC with existing contact matrices?
7.4 years ago Aaron Lun ★ 29k
1
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1
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5.1k
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Answer: A: edgeR for continuous independent variables
7.4 years ago Aaron Lun ★ 29k
2,880 results • Page 15 of 58
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