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3
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1
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1.7k
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Answer: A: Finding genes respond differently to treatment between many genotype comparison
7.6 years ago Aaron Lun ★ 29k
0
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0
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744
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Answer: A: Do we include unclassified reads (and other ambiguous reads) in normalization
7.6 years ago Aaron Lun ★ 29k
0
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1
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1.4k
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Comment: C: AveLogCPM of a library subset
7.6 years ago Aaron Lun ★ 29k
1
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1
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1.4k
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Comment: C: AveLogCPM of a library subset
7.6 years ago Aaron Lun ★ 29k
3
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1
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1.4k
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Answer: A: AveLogCPM of a library subset
7.6 years ago Aaron Lun ★ 29k
2
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0
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1.6k
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Answer: A: Absence of significant gene in DEG list
7.6 years ago Aaron Lun ★ 29k
0
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0
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2.4k
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Comment: C: Compare groups of different RNAseq sets
7.6 years ago Aaron Lun ★ 29k
1
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1
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2.4k
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Answer: A: Compare groups of different RNAseq sets
7.6 years ago Aaron Lun ★ 29k
0
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0
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1.5k
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Answer: A: Global Trend Analysis using results from EdgeR
7.6 years ago Aaron Lun ★ 29k
0
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1
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1.6k
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Comment: C: Absence of significant gene in DEG list
7.6 years ago Aaron Lun ★ 29k
0
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0
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2.1k
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Answer: A: Converting scater-normalized UMI data to Monocle CellDataSet
7.6 years ago Aaron Lun ★ 29k
0
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0
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2.1k
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Comment: C: Comparison between limma and edgeR of reads ratio
7.6 years ago Aaron Lun ★ 29k
0
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1
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1.5k
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Comment: C: how to create csv file with name of gene from unique ID of lcpm ?
7.6 years ago Aaron Lun ★ 29k
0
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0
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2.2k
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Comment: C: EdgeR: Prior degrees of freedom effect on tag wise dispersion
7.6 years ago Aaron Lun ★ 29k
1
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1
reply
2.1k
views
Answer: A: Comparison between limma and edgeR of reads ratio
7.6 years ago Aaron Lun ★ 29k
2
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2
replies
2.2k
views
Answer: A: EdgeR: Prior degrees of freedom effect on tag wise dispersion
7.6 years ago Aaron Lun ★ 29k
0
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0
replies
2.1k
views
Comment: C: Comparison between limma and edgeR of reads ratio
7.6 years ago Aaron Lun ★ 29k
0
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0
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1.6k
views
Comment: C: Normalizing to multiple spike-in concentrations with scran
7.6 years ago Aaron Lun ★ 29k
0
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1
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2.1k
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Comment: C: Comparison between limma and edgeR of reads ratio
7.6 years ago Aaron Lun ★ 29k
0
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1
reply
2.1k
views
Comment: C: Comparison between limma and edgeR of reads ratio
7.6 years ago Aaron Lun ★ 29k
0
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0
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5.4k
views
Comment: C: Warning: negative size factors
7.6 years ago Aaron Lun ★ 29k
1
vote
1
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2.2k
views
Comment: C: edgeR error when trying to filter peaks with low read counts
7.6 years ago Aaron Lun ★ 29k
1
vote
1
reply
1.5k
views
Answer: A: how to create csv file with name of gene from unique ID of lcpm ?
7.6 years ago Aaron Lun ★ 29k
0
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0
replies
2.2k
views
Comment: C: edgeR error when trying to filter peaks with low read counts
7.6 years ago Aaron Lun ★ 29k
0
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1
reply
3.0k
views
Comment: C: edgeR/DGEList add assays to a DGEList like in SummarizedExperiment
7.6 years ago Aaron Lun ★ 29k
1
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0
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3.0k
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Answer: A: edgeR/DGEList add assays to a DGEList like in SummarizedExperiment
7.6 years ago Aaron Lun ★ 29k
3
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2
replies
2.2k
views
Answer: A: edgeR error when trying to filter peaks with low read counts
7.6 years ago Aaron Lun ★ 29k
1
vote
1
reply
1.8k
views
Comment: C: edgeR: Choice of reference group in nested model
7.6 years ago Aaron Lun ★ 29k
3
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1
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1.8k
views
Answer: A: edgeR: Choice of reference group in nested model
7.6 years ago Aaron Lun ★ 29k
0
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0
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1.4k
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Comment: C: limma RNA-seq analysis of human data
7.6 years ago Aaron Lun ★ 29k
2
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1
reply
1.4k
views
Answer: A: limma RNA-seq analysis of human data
7.6 years ago Aaron Lun ★ 29k
0
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0
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1.6k
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Comment: C: Error in ebayes in limma when analyzing GTEx data
7.6 years ago Aaron Lun ★ 29k
5
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0
replies
1.1k
views
Answer: A: edgeR normalisation factors different between experimental groups
updated 7.6 years ago by 53k • written 7.6 years ago by ★ 29k
2
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0
replies
2.3k
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Comment: C: Accessing normalized counts
7.6 years ago Aaron Lun ★ 29k
0
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0
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2.0k
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Comment: C: Repeated Measures, Within-Subject, Between-Groups RNAseq Analysis
7.6 years ago Aaron Lun ★ 29k
0
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1
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1.8k
views
Comment: C: Trying to simplify Interaction analysis with edger, and propably failing to do s
7.6 years ago Aaron Lun ★ 29k
0
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0
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1.2k
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Comment: C: Update package permission Everytime
7.6 years ago Aaron Lun ★ 29k
2
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1
reply
2.1k
views
Answer: A: Size limit of external data
7.6 years ago Aaron Lun ★ 29k
1
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0
replies
3.0k
views
Comment: C: sample size determination in microarrays studies with limma analysis
7.6 years ago Aaron Lun ★ 29k
0
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0
replies
2.3k
views
Comment: C: error: NA counts not permitted
7.6 years ago Aaron Lun ★ 29k
7
votes
1
reply
36k
views
Comment: C: How does edgeR cpm function calculate log(CPM) values?
7.6 years ago Aaron Lun ★ 29k
1
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0
replies
4.1k
views
Comment: C: Difficulty in finding DEG using TCGA data from FireBrowse
7.6 years ago Aaron Lun ★ 29k
0
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0
replies
3.0k
views
Comment: C: sample size determination in microarrays studies with limma analysis
7.6 years ago Aaron Lun ★ 29k
2
votes
1
reply
2.4k
views
Answer: A: One-way hypothesis test in limma
7.6 years ago • updated 4.7 years ago Aaron Lun ★ 29k
1
vote
1
reply
4.1k
views
Comment: C: Difficulty in finding DEG using TCGA data from FireBrowse
7.6 years ago Aaron Lun ★ 29k
1
vote
1
reply
3.4k
views
Comment: C: Analysis of pathways using edgeR
7.6 years ago Aaron Lun ★ 29k
0
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1
reply
2.3k
views
Answer: A: error: NA counts not permitted
7.6 years ago Aaron Lun ★ 29k
2
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0
replies
1.8k
views
Answer: A: EdgeR model formula design matrix
7.6 years ago Aaron Lun ★ 29k
0
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0
replies
3.0k
views
Comment: C: LIMMA : group specific effect of a treatment while controlling for individual ef
7.6 years ago Aaron Lun ★ 29k
1
vote
0
replies
1.8k
views
Comment: C: EdgeR model formula design matrix
7.6 years ago Aaron Lun ★ 29k
2,880 results • Page 17 of 58
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