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2
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0
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3.0k
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Answer: A: sample size determination in microarrays studies with limma analysis
7.6 years ago Aaron Lun ★ 29k
1
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0
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48k
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Comment: C: Differential expression analysis starting from TPM data
7.6 years ago Aaron Lun ★ 29k
0
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1
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1.8k
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Comment: C: EdgeR model formula design matrix
7.6 years ago Aaron Lun ★ 29k
3
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1
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4.1k
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Answer: A: Difficulty in finding DEG using TCGA data from FireBrowse
7.6 years ago Aaron Lun ★ 29k
3
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0
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4.4k
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Comment: C: cameraPR vs geneSetTest and ROAST/CAMERA in general
7.6 years ago Aaron Lun ★ 29k
0
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1
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48k
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Comment: C: Differential expression analysis starting from TPM data
7.6 years ago Aaron Lun ★ 29k
9
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1
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4.4k
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Answer: A: cameraPR vs geneSetTest and ROAST/CAMERA in general
7.6 years ago Aaron Lun ★ 29k
1
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1
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2.6k
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Answer: A: limma package - error code about F-statistics not found in fit
7.6 years ago Aaron Lun ★ 29k
1
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0
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1.8k
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Comment: C: rdhd5f build error undefined symbol: ompi_mpi_cxx_op_intercept
7.6 years ago Aaron Lun ★ 29k
2
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0
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3.4k
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Answer: A: Using HDF5Array writeHDF5Array for a large dgCMatrix
7.6 years ago Aaron Lun ★ 29k
0
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0
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2.6k
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Comment: C: limma - Multi-level Experiments - time course data
7.6 years ago Aaron Lun ★ 29k
1
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1
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2.6k
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Answer: A: limma - Multi-level Experiments - time course data
7.6 years ago Aaron Lun ★ 29k
0
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2.7k
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Comment: C: Limma : time course experiment with missing data
7.6 years ago Aaron Lun ★ 29k
0
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0
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1.6k
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Answer: A: mean and SD in output of Limma for differential-gene-expression
7.7 years ago Aaron Lun ★ 29k
1
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1
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1.6k
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Comment: C: How is the best way to construct the model.matrix and the lmfit comparing longit
7.7 years ago Aaron Lun ★ 29k
1
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1
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1.7k
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Comment: C: Complicated unbalanced block DOE with partially paired samples and analysis
7.7 years ago Aaron Lun ★ 29k
1
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0
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1.6k
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Answer: A: Normalizing to multiple spike-in concentrations with scran
7.7 years ago Aaron Lun ★ 29k
2
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1
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1.7k
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Answer: A: Complicated unbalanced block DOE with partially paired samples and analysis
7.7 years ago Aaron Lun ★ 29k
0
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2
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1.7k
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Answer: A: differential expression analysis of cell subtypes mixture
7.7 years ago Aaron Lun ★ 29k
0
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0
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1.3k
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Answer: A: The explanation of plotExplanatoryVariables plot
7.7 years ago Aaron Lun ★ 29k
0
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0
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3.0k
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Comment: C: LIMMA : group specific effect of a treatment while controlling for individual ef
7.7 years ago Aaron Lun ★ 29k
2
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1
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1.8k
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Answer: A: Difficulties with probable batch effect in paired blocked (treatment and placebo
7.7 years ago Aaron Lun ★ 29k
1
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1
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1.3k
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Answer: A: Inserting "Biotype" into scater SCE objects
7.7 years ago Aaron Lun ★ 29k
1
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0
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992
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Answer: A: EdgeR model matrix: interaction term
7.7 years ago Aaron Lun ★ 29k
3
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1
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3.6k
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Answer: A: edgeR cpm() function with and without log2
7.7 years ago Aaron Lun ★ 29k
1
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0
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872
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Answer: A: edgeR: Subset DGEList by treatment-specific expression
7.7 years ago Aaron Lun ★ 29k
1
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0
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1.3k
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Comment: C: edgeR multifactorial analysis implementation with RNA-Seq data
7.7 years ago Aaron Lun ★ 29k
2
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1
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1.8k
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Answer: A: Difficulty creating SummarizedExperiment
7.7 years ago Aaron Lun ★ 29k
3
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0
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1.8k
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Answer: A: How to find the degree of freedom, effect size and the variance of effect size f
7.7 years ago Aaron Lun ★ 29k
2
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1
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1.4k
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Answer: A: csaw: Estimate fragment length
7.7 years ago Aaron Lun ★ 29k
1
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1
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2.0k
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Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
7.7 years ago Aaron Lun ★ 29k
0
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1
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2.0k
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Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
7.7 years ago Aaron Lun ★ 29k
0
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1
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2.0k
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Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
7.7 years ago Aaron Lun ★ 29k
1
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1
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2.0k
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Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
7.7 years ago Aaron Lun ★ 29k
1
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1
reply
3.0k
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Answer: A: LIMMA : group specific effect of a treatment while controlling for individual ef
7.7 years ago Aaron Lun ★ 29k
2
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1
reply
1.3k
views
Answer: A: edgeR multifactorial analysis implementation with RNA-Seq data
7.7 years ago Aaron Lun ★ 29k
0
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1
reply
2.0k
views
Answer: A: How to get DE relative to a fold-change threshold in single factor experiments
7.7 years ago Aaron Lun ★ 29k
0
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2
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5.4k
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Comment: C: Warning: negative size factors
7.7 years ago Aaron Lun ★ 29k
0
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0
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1.8k
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Comment: C: Normalisation in edgeR
7.7 years ago Aaron Lun ★ 29k
0
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1
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5.4k
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Comment: C: Warning: negative size factors
7.7 years ago Aaron Lun ★ 29k
0
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0
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3.0k
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Comment: C: Group-specific condition effects, individual nested within groups - limma voom
7.7 years ago Aaron Lun ★ 29k
6
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1
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2.8k
views
Answer: A: edger glmQLFit mix glmLRT
7.7 years ago Aaron Lun ★ 29k
0
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0
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4.3k
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Comment: C: Beachmat install / compile issue
7.7 years ago Aaron Lun ★ 29k
0
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1
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3.2k
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Comment: C: Microarray expression analysis for on factor taking account confounders (covaria
7.7 years ago Aaron Lun ★ 29k
1
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0
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5.0k
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Comment: C: limma contrast matrix
7.7 years ago Aaron Lun ★ 29k
1
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0
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1.6k
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Answer: A: DESeq, DESeq2 or EdgeR normalization for gene expression on multiple tissues wit
7.7 years ago Aaron Lun ★ 29k
0
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1
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3.2k
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Comment: C: Microarray expression analysis for on factor taking account confounders (covaria
7.7 years ago Aaron Lun ★ 29k
1
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1
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5.4k
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Comment: C: Warning: negative size factors
7.7 years ago Aaron Lun ★ 29k
1
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1
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5.4k
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Comment: C: Warning: negative size factors
7.7 years ago Aaron Lun ★ 29k
2
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1
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5.4k
views
Answer: A: Warning: negative size factors
7.7 years ago Aaron Lun ★ 29k
2,880 results • Page 18 of 58
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