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2
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1
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1.8k
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Answer: A: Packages employing RangedSummarizedExperiment objects
7.9 years ago Aaron Lun ★ 29k
2
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0
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2.0k
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Answer: A: Can DESeq2/edgeR perform differential analysis for rRNA?
7.9 years ago Aaron Lun ★ 29k
1
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0
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2.2k
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Comment: C: Unbalanced experiment with multiple samples from each patient.
7.9 years ago Aaron Lun ★ 29k
1
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0
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2.2k
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Comment: C: Unbalanced experiment with multiple samples from each patient.
7.9 years ago Aaron Lun ★ 29k
0
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0
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1.5k
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Answer: A: Subsetting an EList Object doesn't subset $sample.weights
7.9 years ago Aaron Lun ★ 29k
1
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1
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2.7k
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Answer: A: RNA-seq read alignment best practices for low-input samples
7.9 years ago Aaron Lun ★ 29k
5
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1
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2.5k
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Answer: A: Representvie gene expression value in one condition with several replicates
7.9 years ago Aaron Lun ★ 29k
2
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0
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2.8k
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Answer: A: humann2 output appropriate for EdgeR or DESeq2 analysis
7.9 years ago Aaron Lun ★ 29k
0
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1
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1.7k
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Answer: A: Scater read10xResults produces a SingleCellExperiment object that contains dots
7.9 years ago Aaron Lun ★ 29k
5
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3
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2.2k
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Answer: A: Unbalanced experiment with multiple samples from each patient.
7.9 years ago Aaron Lun ★ 29k
0
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0
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8.8k
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Comment: C: Correct sequence of functions for edgeR, edgeR robust and edgeR QL.
7.9 years ago Aaron Lun ★ 29k
0
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1
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8.8k
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Comment: C: Correct sequence of functions for edgeR, edgeR robust and edgeR QL.
7.9 years ago Aaron Lun ★ 29k
0
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1
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7.2k
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Comment: C: Limma PlotMDS: what values should be used?
7.9 years ago Aaron Lun ★ 29k
0
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1
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7.2k
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Comment: C: Limma PlotMDS: what values should be used?
7.9 years ago Aaron Lun ★ 29k
2
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0
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7.2k
views
Answer: A: Limma PlotMDS: what values should be used?
7.9 years ago Aaron Lun ★ 29k
0
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1
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1.5k
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Answer: A: pthread problem with tokay2 window platform
7.9 years ago Aaron Lun ★ 29k
1
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0
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1.6k
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Comment: C: How to judge DESeq2_block and EdgeR_block result
7.9 years ago Aaron Lun ★ 29k
2
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0
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1.7k
views
Answer: A: Opinions on DESeqDataSetFromMatrix rowSums minimum for ChIP and/or ATAC-seq
7.9 years ago Aaron Lun ★ 29k
4
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1
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1.2k
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Answer: A: Paired factorial design model in limma
7.9 years ago Aaron Lun ★ 29k
1
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0
replies
861
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Answer: A: How to create a model matrix to test the association between age and gene expres
7.9 years ago Aaron Lun ★ 29k
0
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0
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777
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Comment: C: microarray data analysis using limma package
7.9 years ago Aaron Lun ★ 29k
0
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0
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2.5k
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Comment: C: error when installing beachmat
7.9 years ago Aaron Lun ★ 29k
0
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0
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2.5k
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Comment: C: error when installing beachmat
7.9 years ago Aaron Lun ★ 29k
0
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1
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2.5k
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Answer: A: error when installing beachmat
7.9 years ago Aaron Lun ★ 29k
0
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0
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2.5k
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Comment: C: error when installing beachmat
7.9 years ago Aaron Lun ★ 29k
0
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0
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2.0k
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Comment: C: glmTreat Errors for multi coefficient and analysis of deviance situations.
8.0 years ago Aaron Lun ★ 29k
0
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0
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10k
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Comment: C: edgeR and batch effect
8.0 years ago Aaron Lun ★ 29k
2
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1
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2.1k
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Comment: C: Improve limma-voom trend fit to noisy data
8.0 years ago Aaron Lun ★ 29k
1
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1
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2.1k
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Comment: C: Improve limma-voom trend fit to noisy data
8.0 years ago Aaron Lun ★ 29k
1
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0
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9.3k
views
Comment: C: EdgeR design matrix with 3 factors
8.0 years ago Aaron Lun ★ 29k
1
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1
reply
2.1k
views
Answer: A: Improve limma-voom trend fit to noisy data
8.0 years ago Aaron Lun ★ 29k
0
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1
reply
2.2k
views
Answer: A: normalization of CHIP-seq samples (ChIP and INPUT)
8.0 years ago Aaron Lun ★ 29k
0
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1
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2.1k
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Comment: C: scran::trendVar throwing error
8.0 years ago Aaron Lun ★ 29k
0
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1
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2.5k
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Comment: C: Loads, really loads of DEGs after edgeR differential analysis
8.0 years ago Aaron Lun ★ 29k
0
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1
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2.1k
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Comment: C: scran::trendVar throwing error
8.0 years ago Aaron Lun ★ 29k
1
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1
reply
9.3k
views
Comment: C: EdgeR design matrix with 3 factors
8.0 years ago Aaron Lun ★ 29k
2
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1
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9.3k
views
Answer: A: EdgeR design matrix with 3 factors
8.0 years ago Aaron Lun ★ 29k
0
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0
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2.1k
views
Answer: A: scran::trendVar throwing error
8.0 years ago Aaron Lun ★ 29k
1
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1
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2.8k
views
Comment: C: Multiple comparison of coefficients in limma
8.0 years ago Aaron Lun ★ 29k
0
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1
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1.6k
views
Comment: C: Clarification regarding analysis with multi-factorial design
8.0 years ago Aaron Lun ★ 29k
0
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0
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1.6k
views
Answer: A: Clarification regarding analysis with multi-factorial design
8.0 years ago Aaron Lun ★ 29k
0
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1
reply
2.5k
views
Comment: C: Loads, really loads of DEGs after edgeR differential analysis
8.0 years ago Aaron Lun ★ 29k
0
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1
reply
2.9k
views
Comment: C: block design to test two factors with limma
8.0 years ago Aaron Lun ★ 29k
0
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1
reply
2.5k
views
Comment: C: Loads, really loads of DEGs after edgeR differential analysis
8.0 years ago Aaron Lun ★ 29k
2
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1
reply
2.9k
views
Answer: A: block design to test two factors with limma
8.0 years ago Aaron Lun ★ 29k
3
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2
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4.5k
views
Answer: A: Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dat
8.0 years ago Aaron Lun ★ 29k
0
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1
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2.9k
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Comment: C: block design to test two factors with limma
8.0 years ago Aaron Lun ★ 29k
1
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0
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978
views
Comment: C: Outdated packages in R 3.4.2
8.0 years ago Aaron Lun ★ 29k
3
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0
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2.8k
views
Answer: A: Paired Test - Design Matrix and Contrast Matrix Voom and Limma
8.0 years ago Aaron Lun ★ 29k
2
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0
replies
3.5k
views
Answer: A: Can't install edgeR because of compilation error: make: *** [R_add_prior_count.o
8.0 years ago Aaron Lun ★ 29k
2,880 results • Page 20 of 58
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