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Answer: A: Error in .External.graphics(C_layout, num.rows, num.cols, mat, as.integer(num.fi
8.1 years ago Aaron Lun ★ 29k
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1.2k
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Answer: A: adding a description column to glmTreat output
8.1 years ago Aaron Lun ★ 29k
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1.7k
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Comment: C: Using multiple factor analysis in edgeR
8.1 years ago Aaron Lun ★ 29k
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1.7k
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Comment: C: Using multiple factor analysis in edgeR
8.1 years ago Aaron Lun ★ 29k
2
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1.0k
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Answer: A: Error in `rownames<-`(`*tmp*`, value = list(genes
8.1 years ago Aaron Lun ★ 29k
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1
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1.4k
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Comment: C: Missing design when using Scran to create a DESeqDataSet
8.1 years ago Aaron Lun ★ 29k
1
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1
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1.7k
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Comment: C: Using multiple factor analysis in edgeR
8.1 years ago Aaron Lun ★ 29k
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1
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1.4k
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Answer: A: Missing design when using Scran to create a DESeqDataSet
8.1 years ago Aaron Lun ★ 29k
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1
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1.7k
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Comment: C: Removing batch effect on edgeR when interactons are looked at
8.1 years ago Aaron Lun ★ 29k
2
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1.1k
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Answer: A: combine two differential expression methods
8.1 years ago Aaron Lun ★ 29k
2
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1.7k
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Answer: A: Removing batch effect on edgeR when interactons are looked at
8.1 years ago Aaron Lun ★ 29k
0
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0
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646
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Answer: A: differentially expressed miRNA
8.1 years ago Aaron Lun ★ 29k
9
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2
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13k
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Answer: A: Different logFC (log2foldchange) values for genes from limma-voom and other too
8.2 years ago Aaron Lun ★ 29k
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0
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3.1k
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Comment: C: tximport recommendation for limma-trend downstream analysis?
8.2 years ago Aaron Lun ★ 29k
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2
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3.1k
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Answer: A: tximport recommendation for limma-trend downstream analysis?
8.2 years ago Aaron Lun ★ 29k
0
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0
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4.8k
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Answer: A: problems when working with SingleCellExperiment object in scater
8.2 years ago Aaron Lun ★ 29k
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3.9k
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Comment: C: Choosing genes for clustering
8.2 years ago Aaron Lun ★ 29k
3
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1.6k
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Answer: A: Differential gene expression for multi-factorial experiment using edgeR
8.2 years ago Aaron Lun ★ 29k
1
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1
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3.8k
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Answer: A: DESeq2/edgeR DEG analysis data input from TCGA and correation analysis
8.2 years ago Aaron Lun ★ 29k
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0
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2.9k
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Comment: C: Help to understand my contrast.matrix and to interpret my topTable results
8.2 years ago Aaron Lun ★ 29k
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0
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7.8k
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Comment: C: RNA-Seq Batch correction negative values
8.2 years ago Aaron Lun ★ 29k
0
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1
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3.5k
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Comment: C: Error when merging SCESet objects
8.2 years ago Aaron Lun ★ 29k
0
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1
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7.8k
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Comment: C: RNA-Seq Batch correction negative values
8.2 years ago Aaron Lun ★ 29k
1
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1
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7.8k
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Answer: A: RNA-Seq Batch correction negative values
8.2 years ago Aaron Lun ★ 29k
3
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0
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2.5k
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Answer: A: column nubering plotMDS
8.2 years ago Aaron Lun ★ 29k
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3.8k
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Comment: C: Error: could not find function "findMarkers"
8.2 years ago Aaron Lun ★ 29k
0
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0
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6.7k
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Comment: C: Using edgeR or DESeq2 to analyze allele-specific expression?
8.2 years ago Aaron Lun ★ 29k
0
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1
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1.7k
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Answer: A: Differential ChIP-seq with csaw: How to normalise counts on repetitive regions (
8.2 years ago Aaron Lun ★ 29k
2
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1
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1.5k
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Answer: A: csaw::combineTests: Error: length(ids) == nrow(tab) is not TRUE
8.2 years ago Aaron Lun ★ 29k
3
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1
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1.3k
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Answer: A: Saving output from glmTreat to a csv file?
updated 8.2 years ago by 53k • written 8.2 years ago by ★ 29k
0
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0
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1.3k
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Comment: C: Saving output from glmTreat to a csv file?
8.2 years ago Aaron Lun ★ 29k
2
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0
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2.6k
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Comment: C: Why edgeR::aveLogCPM() is simlar to log2(rowMeans(cpm)) instead of rowMeans(cpm(
8.2 years ago Aaron Lun ★ 29k
5
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1
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2.6k
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Answer: A: Why edgeR::aveLogCPM() is simlar to log2(rowMeans(cpm)) instead of rowMeans(cpm(
8.2 years ago Aaron Lun ★ 29k
0
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1
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2.0k
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Answer: A: bias.data vector must have the same length as DEgenes vector!
8.2 years ago Aaron Lun ★ 29k
3
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0
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687
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Answer: A: adding genes to edgeR
8.2 years ago Aaron Lun ★ 29k
0
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1
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3.3k
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Comment: C: Limma for differential expression in a time-course
8.2 years ago Aaron Lun ★ 29k
0
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1
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3.3k
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Comment: C: Limma for differential expression in a time-course
8.2 years ago Aaron Lun ★ 29k
1
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1
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3.5k
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Comment: C: Error when merging SCESet objects
8.2 years ago Aaron Lun ★ 29k
1
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0
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3.8k
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Comment: C: edgeR - MDS Plot for Count Data
8.2 years ago Aaron Lun ★ 29k
0
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1
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3.3k
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Comment: C: Limma for differential expression in a time-course
8.2 years ago Aaron Lun ★ 29k
2
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1
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3.5k
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Answer: A: Error when merging SCESet objects
8.2 years ago Aaron Lun ★ 29k
4
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0
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13k
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Answer: A: Limma and batch effect
8.2 years ago Aaron Lun ★ 29k
0
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0
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2.0k
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Comment: C: goseq after edgeR
8.2 years ago Aaron Lun ★ 29k
3
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1
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1.7k
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Answer: A: Limma Singlet Moderated T-Test
8.4 years ago • updated 8.2 years ago Aaron Lun ★ 29k
2
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1
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3.3k
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Answer: A: Limma for differential expression in a time-course
8.2 years ago Aaron Lun ★ 29k
0
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1
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2.0k
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Answer: A: goseq after edgeR
8.2 years ago Aaron Lun ★ 29k
3
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1
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2.2k
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Answer: A: csaw: how does unequal sample size affect filtering filterWindows step
8.2 years ago Aaron Lun ★ 29k
1
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1
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3.8k
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Comment: C: edgeR - MDS Plot for Count Data
8.2 years ago Aaron Lun ★ 29k
1
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1
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10k
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Answer: A: Limma paired sample analysis
8.2 years ago Aaron Lun ★ 29k
1
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1
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3.8k
views
Comment: C: edgeR - MDS Plot for Count Data
8.2 years ago Aaron Lun ★ 29k
2,880 results • Page 23 of 58
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