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2
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Answer: A: Strnge limma plot
8.6 years ago Aaron Lun ★ 29k
0
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Comment: C: Problem Installing limma package
8.6 years ago Aaron Lun ★ 29k
1
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14k
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Answer: A: Problem Installing limma package
8.6 years ago Aaron Lun ★ 29k
0
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1.5k
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Answer: A: Up and down regulation in LIMMA for microarray dataset
8.6 years ago Aaron Lun ★ 29k
0
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872
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Answer: A: arrayExpress differential gene express analysis
8.6 years ago Aaron Lun ★ 29k
2
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1.5k
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Answer: A: Warning messages from diffSplice in Limma
8.6 years ago Aaron Lun ★ 29k
1
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1
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5.4k
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Answer: A: Why does scran's computeSumFactors produce different size factors for cells with
8.6 years ago Aaron Lun ★ 29k
1
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1.3k
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Answer: A: Most Efficient Application of Voom to Regularly Increasing Study
8.6 years ago Aaron Lun ★ 29k
1
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5.4k
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Comment: C: Why does scran's computeSumFactors produce different size factors for cells with
8.6 years ago Aaron Lun ★ 29k
0
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1
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5.4k
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Comment: C: Why does scran's computeSumFactors produce different size factors for cells with
8.6 years ago Aaron Lun ★ 29k
0
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1
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5.4k
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Comment: C: Why does scran's computeSumFactors produce different size factors for cells with
8.6 years ago Aaron Lun ★ 29k
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4.3k
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Comment: C: Computing contrasts with a covariate using edgeR glmLRT()
8.6 years ago Aaron Lun ★ 29k
2
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1
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2.8k
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Answer: A: Pairwise differential expression analysis with batch effect using edgeR and SVA
8.6 years ago Aaron Lun ★ 29k
1
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8.0k
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Comment: C: edgeR glmLRT with test="F"?
8.6 years ago Aaron Lun ★ 29k
0
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1
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4.3k
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Comment: C: Computing contrasts with a covariate using edgeR glmLRT()
8.6 years ago Aaron Lun ★ 29k
1
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1
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8.0k
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Comment: C: edgeR glmLRT with test="F"?
8.6 years ago Aaron Lun ★ 29k
1
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1
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8.0k
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Comment: C: edgeR glmLRT with test="F"?
8.6 years ago Aaron Lun ★ 29k
3
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1
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4.3k
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Answer: A: limma for metabolite data
8.6 years ago Aaron Lun ★ 29k
1
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1
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8.0k
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Comment: C: edgeR glmLRT with test="F"?
8.6 years ago Aaron Lun ★ 29k
0
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1
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4.3k
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Comment: C: Computing contrasts with a covariate using edgeR glmLRT()
8.6 years ago Aaron Lun ★ 29k
0
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1
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1.0k
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Answer: A: How do I set up the design when I have multiple regions and duplicate timepoints
8.6 years ago Aaron Lun ★ 29k
0
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6.5k
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Comment: C: limma interaction contrasts
8.6 years ago Aaron Lun ★ 29k
0
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1
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6.5k
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Comment: C: limma interaction contrasts
8.6 years ago Aaron Lun ★ 29k
1
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2.8k
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Comment: C: Correct contrast for testing multi-level interaction effect in limma using combi
8.6 years ago Aaron Lun ★ 29k
1
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0
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3.2k
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Comment: C: How to deal with up to 75% of DE genes in RNA-seq (TMM, edgeR) ?
8.6 years ago Aaron Lun ★ 29k
4
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1
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2.8k
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Answer: A: Correct contrast for testing multi-level interaction effect in limma using combi
8.6 years ago Aaron Lun ★ 29k
3
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1
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3.5k
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Answer: A: applying voom + limma to a block factor design in RNA-seq experiment
8.6 years ago Aaron Lun ★ 29k
1
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1
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2.5k
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Answer: A: How to proceed with different degradation levels of RNA-seq samples?
8.6 years ago Aaron Lun ★ 29k
1
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1
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3.2k
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Answer: A: How to deal with up to 75% of DE genes in RNA-seq (TMM, edgeR) ?
8.6 years ago Aaron Lun ★ 29k
1
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2
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1.9k
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Answer: A: How different ploidy affect differential expression analysis with RNA-seq
8.6 years ago Aaron Lun ★ 29k
1
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1
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3.7k
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Answer: A: Tutorial for RNA-Seq Data Analysis
8.6 years ago Aaron Lun ★ 29k
0
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1
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6.5k
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Comment: C: limma interaction contrasts
8.6 years ago Aaron Lun ★ 29k
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1
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6.5k
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Answer: A: limma interaction contrasts
8.6 years ago Aaron Lun ★ 29k
0
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0
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6.5k
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Comment: C: limma interaction contrasts
8.6 years ago Aaron Lun ★ 29k
2
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1.3k
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Comment: C: [edgeR Usage] Constructing DGE test with fewer input variables
8.6 years ago Aaron Lun ★ 29k
3
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1
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5.0k
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Answer: A: EdgeR on miRNA data
8.6 years ago Aaron Lun ★ 29k
1
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1
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1.3k
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Answer: A: [edgeR Usage] Constructing DGE test with fewer input variables
8.6 years ago Aaron Lun ★ 29k
1
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0
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879
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Comment: C: Question about sharing a function in the R package
8.7 years ago Aaron Lun ★ 29k
0
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1
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2.0k
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Comment: C: Not able to reproduce limma results from affy chip with or without CEL file from
8.7 years ago Aaron Lun ★ 29k
0
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1
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2.0k
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Comment: C: Not able to reproduce limma results from affy chip with or without CEL file from
8.7 years ago Aaron Lun ★ 29k
0
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1
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1.9k
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Comment: C: How to do multivariate glmFit analysis of RNA-seq with edgeR
8.7 years ago Aaron Lun ★ 29k
1
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0
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1.7k
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Answer: A: diffHiC with no biological replicates?
8.7 years ago Aaron Lun ★ 29k
2
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1
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3.9k
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Answer: A: Single cells batch effects
8.7 years ago Aaron Lun ★ 29k
1
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0
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5.8k
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Comment: C: Is there any point to TMM-normalize TPM prior to limma-voom?
8.7 years ago Aaron Lun ★ 29k
0
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0
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4.2k
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Comment: C: limma: how to use pairing and adjust for covariates
8.7 years ago Aaron Lun ★ 29k
2
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1
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6.8k
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Comment: C: limma blocking and including covariates
8.7 years ago Aaron Lun ★ 29k
3
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1
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6.8k
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Comment: C: limma blocking and including covariates
8.7 years ago Aaron Lun ★ 29k
0
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1
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4.9k
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Comment: C: remove batch effect and adjusted model for 4 covariates in Limma
8.7 years ago Aaron Lun ★ 29k
0
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1
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4.9k
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Comment: C: remove batch effect and adjusted model for 4 covariates in Limma
8.7 years ago Aaron Lun ★ 29k
0
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0
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4.9k
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Comment: C: remove batch effect and adjusted model for 4 covariates in Limma
8.7 years ago Aaron Lun ★ 29k
2,880 results • Page 28 of 58
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