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Answer: A: Does SingleR return output for every cell it's given or only those that it can p
5.1 years ago Aaron Lun ★ 29k
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3.3k
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Comment: C: Discarding ambient RNA using estimateAmbience
5.1 years ago Aaron Lun ★ 29k
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3.3k
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Answer: A: Discarding ambient RNA using estimateAmbience
5.1 years ago Aaron Lun ★ 29k
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2.3k
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Comment: C: problem recasting InteractionSet into a DGEList
5.2 years ago Aaron Lun ★ 29k
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1.7k
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Answer: A: normOffsets in csaw
5.2 years ago Aaron Lun ★ 29k
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2.7k
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Answer: A: findMarkers() {scran} doesn't really find markers
5.2 years ago Aaron Lun ★ 29k
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3.8k
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Comment: C: Discrepancy between cell type and cluster using SingleCellExperiment and SingleR
5.2 years ago Aaron Lun ★ 29k
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Answer: A: Discrepancy between cell type and cluster using SingleCellExperiment and SingleR
5.2 years ago Aaron Lun ★ 29k
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1.6k
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Answer: A: Biological replicates in single cell experiments DE
5.2 years ago Aaron Lun ★ 29k
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3.8k
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Comment: C: Cluster location in UMAP using SingleCellExperiment and SingleR
5.2 years ago Aaron Lun ★ 29k
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1.7k
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Answer: A: Error in csaw::windowCounts when using readParam
5.2 years ago Aaron Lun ★ 29k
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2.3k
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Comment: C: problem recasting InteractionSet into a DGEList
5.2 years ago Aaron Lun ★ 29k
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2.1k
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Answer: A: Raw counts for reference dataset in single cell rnaseq
5.2 years ago Aaron Lun ★ 29k
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835
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Answer: A: Custom dispersion estimate DESeq2
5.2 years ago Aaron Lun ★ 29k
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2.3k
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Answer: A: problem recasting InteractionSet into a DGEList
5.2 years ago Aaron Lun ★ 29k
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2.2k
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Answer: A: marker genes in single cell experiment
5.2 years ago Aaron Lun ★ 29k
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2.1k
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Answer: A: most correlated genes in SingleR
5.2 years ago Aaron Lun ★ 29k
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2.7k
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Comment: C: multiBatchNorm vs. calculateSumFactors on concatenated dataset
5.2 years ago Aaron Lun ★ 29k
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2.7k
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Answer: A: multiBatchNorm vs. calculateSumFactors on concatenated dataset
5.2 years ago Aaron Lun ★ 29k
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2.2k
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Answer: A: using gene list for singleR
5.2 years ago Aaron Lun ★ 29k
1
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3.6k
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Comment: C: Cell cycle regression for scRNA-seq data
5.2 years ago Aaron Lun ★ 29k
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3.6k
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Answer: A: Cell cycle regression for scRNA-seq data
5.2 years ago Aaron Lun ★ 29k
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3.8k
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Comment: C: Trajectory analysis for single cell sequencing
5.3 years ago Aaron Lun ★ 29k
2
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3.8k
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Answer: A: Trajectory analysis for single cell sequencing
5.3 years ago Aaron Lun ★ 29k
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2.4k
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Answer: A: predicting cell type of clusters using singleR
5.3 years ago Aaron Lun ★ 29k
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4.7k
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Comment: C: Is Limma's removeBatchEffect() and log2() commutative?
5.3 years ago Aaron Lun ★ 29k
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2.9k
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Answer: A: marker genes in singleR
5.3 years ago Aaron Lun ★ 29k
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Comment: C: scRNA-seq pseudo-bulk differential expression analysis with pseudobulkDGE()
5.3 years ago Aaron Lun ★ 29k
3
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8.5k
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Answer: A: scRNA-seq pseudo-bulk differential expression analysis with pseudobulkDGE()
5.3 years ago Aaron Lun ★ 29k
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1
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1.7k
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Comment: C: Question: Method to get normalize allele specific read counts
5.4 years ago Aaron Lun ★ 29k
3
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1.5k
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Comment: C: tximport + edgeR not recommended?
5.4 years ago Aaron Lun ★ 29k
2
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1.7k
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Answer: A: Question: Method to get normalize allele specific read counts
5.4 years ago Aaron Lun ★ 29k
1
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1
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1.9k
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Answer: A: Why is an averaged reference used in DESeq2 normalisation?
5.4 years ago Aaron Lun ★ 29k
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1
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1.4k
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Answer: A: question for "Chapter 24 Zeisel mouse brain (STRT-Seq) in single-cell"
5.4 years ago Aaron Lun ★ 29k
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1
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2.5k
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Answer: A: DiffBind or csaw between different transcription factors
5.4 years ago Aaron Lun ★ 29k
3
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1.8k
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Answer: A: Scaling option in fastMNN
5.4 years ago Aaron Lun ★ 29k
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1.5k
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Answer: A: Resources to learn about s4 object extension/inheritance, custom print methods,
5.4 years ago Aaron Lun ★ 29k
3
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1.9k
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Answer: A: Suggestion for next revision of edgeR User Guide re Design matrix setup
5.5 years ago Aaron Lun ★ 29k
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4.2k
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Comment: C: Carry over variable features when converting FastMNN SCE object to Seurat object
5.5 years ago Aaron Lun ★ 29k
1
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1
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4.2k
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Comment: C: Carry over variable features when converting FastMNN SCE object to Seurat object
5.5 years ago Aaron Lun ★ 29k
3
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7.0k
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Comment: C: Removing cell cycle genes in large data set integration
5.5 years ago Aaron Lun ★ 29k
2
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1
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4.2k
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Answer: A: Carry over variable features when converting FastMNN SCE object to Seurat object
5.5 years ago Aaron Lun ★ 29k
5
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1
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7.0k
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Answer: A: Removing cell cycle genes in large data set integration
5.5 years ago Aaron Lun ★ 29k
0
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1
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2.0k
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Comment: C: scran's quickCluster error
5.5 years ago Aaron Lun ★ 29k
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2.0k
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Answer: A: scran's quickCluster error
5.5 years ago Aaron Lun ★ 29k
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1
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2.4k
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Comment: C: Error while running normOffsets in diffhic
5.5 years ago Aaron Lun ★ 29k
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1.6k
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Answer: A: Output lfc for Wilcox-based findMarkers
5.5 years ago Aaron Lun ★ 29k
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2.7k
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Answer: A: ident function in sce
5.5 years ago Aaron Lun ★ 29k
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4.6k
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Comment: C: Optimal cluster number identification using buildSNNgraph and igraph clusters
5.5 years ago Aaron Lun ★ 29k
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2.2k
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Answer: A: Clearer error messages in SingleCellExperiment cbind
5.5 years ago Aaron Lun ★ 29k
2,880 results • Page 3 of 58
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