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3
votes
1
reply
3.8k
views
Answer: A: Timecourse Differential expression with multiple factors
8.7 years ago Aaron Lun ★ 29k
2
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1
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2.0k
views
Answer: A: Can one get LSMeans and expression confidence intervals from limma and voom?
8.7 years ago Aaron Lun ★ 29k
0
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0
replies
1.4k
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Comment: C: limma decideTests: only p-value less than (but not equal to) alpha are flagged a
8.7 years ago Aaron Lun ★ 29k
0
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1
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2.7k
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Comment: C: design for edgeR
8.7 years ago Aaron Lun ★ 29k
0
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1
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2.7k
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Comment: C: design for edgeR
8.7 years ago Aaron Lun ★ 29k
3
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1
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4.0k
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Answer: A: Using the ERCC spike as a normalization factor for a custom algorithm
8.7 years ago Aaron Lun ★ 29k
3
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1
reply
2.9k
views
Answer: A: (batch) corrections of RNA-seq data: integrating LIMMA and SVA
8.7 years ago Aaron Lun ★ 29k
0
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0
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5.0k
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Comment: C: Disagreement between TMM (edgeR) and RLE (DESeq) normalisation for single-cell d
8.7 years ago Aaron Lun ★ 29k
0
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1
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3.7k
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Comment: C: How to normalize chromatin and RNA-Seq data together ?
8.7 years ago Aaron Lun ★ 29k
1
vote
1
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3.1k
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Comment: C: Strange output from goana()
8.7 years ago Aaron Lun ★ 29k
2
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1
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3.1k
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Answer: A: Strange output from goana()
8.7 years ago Aaron Lun ★ 29k
2
votes
1
reply
1.3k
views
Answer: A: Run windowCounts only on annotated regions?
8.8 years ago Aaron Lun ★ 29k
2
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0
replies
2.4k
views
Answer: A: edgeR: time series analysis
8.8 years ago Aaron Lun ★ 29k
5
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1
reply
2.4k
views
Answer: A: apply edgeR TMM normalization without converting data format into 'DGEList'
8.8 years ago Aaron Lun ★ 29k
0
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0
replies
18k
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Comment: C: edgeR TMM values
8.8 years ago Aaron Lun ★ 29k
1
vote
0
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1.4k
views
Answer: A: RNA-Seq comparisons of various sample
8.8 years ago Aaron Lun ★ 29k
1
vote
1
reply
5.7k
views
Comment: C: edgeR::estimateDisp gives Error in qr.default(x) : NA/NaN/Inf in foreign functio
8.8 years ago Aaron Lun ★ 29k
3
votes
1
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1.6k
views
Answer: A: edgeR QL with voom weights
8.8 years ago Aaron Lun ★ 29k
0
votes
1
reply
1.9k
views
Comment: C: Comparing across sets of regulated genes -- Strategies?
8.8 years ago Aaron Lun ★ 29k
0
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0
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991
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Comment: C: Contrast Specific Dispersion Estimate
8.8 years ago Aaron Lun ★ 29k
0
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1
reply
2.7k
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Comment: C: Limma-voom contrast confusion
8.8 years ago Aaron Lun ★ 29k
3
votes
2
replies
2.7k
views
Answer: A: Limma-voom contrast confusion
8.8 years ago Aaron Lun ★ 29k
0
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0
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1.3k
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Comment: C: selecting the right package for complex designs
8.8 years ago Aaron Lun ★ 29k
0
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1
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1.3k
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Comment: C: selecting the right package for complex designs
8.8 years ago Aaron Lun ★ 29k
1
vote
1
reply
1.8k
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Comment: C: Possible approach of compare/interpret RNA-Seq results with microarray gene expr
8.8 years ago Aaron Lun ★ 29k
1
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0
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6.2k
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Comment: C: multiple comparison using limma
8.8 years ago Aaron Lun ★ 29k
0
votes
1
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1.3k
views
Answer: A: selecting the right package for complex designs
8.8 years ago Aaron Lun ★ 29k
0
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0
replies
981
views
Answer: A: classic vs GLM EDGER
8.8 years ago Aaron Lun ★ 29k
0
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0
replies
981
views
Comment: C: classic vs GLM EDGER
8.8 years ago Aaron Lun ★ 29k
2
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2
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1.8k
views
Answer: A: Possible approach of compare/interpret RNA-Seq results with microarray gene expr
8.8 years ago Aaron Lun ★ 29k
0
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0
replies
2.6k
views
Comment: C: EdgeR differentially expressed genes vs normal boxplot visualization
8.8 years ago Aaron Lun ★ 29k
1
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0
replies
2.6k
views
Answer: A: EdgeR differentially expressed genes vs normal boxplot visualization
8.8 years ago Aaron Lun ★ 29k
0
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0
replies
3.8k
views
Comment: C: edgeR on DEG analysis: Size cannot be NA nor exceed 65536
8.8 years ago Aaron Lun ★ 29k
0
votes
1
reply
3.8k
views
Answer: A: edgeR on DEG analysis: Size cannot be NA nor exceed 65536
8.8 years ago Aaron Lun ★ 29k
0
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0
replies
5.9k
views
Comment: C: How to deal with low-depth RNA-Seq within DESeq2 or edgeR
8.8 years ago Aaron Lun ★ 29k
1
vote
1
reply
2.2k
views
Answer: A: limma contrast with interaction and paired samples
8.8 years ago Aaron Lun ★ 29k
3
votes
1
reply
5.9k
views
Answer: A: How to deal with low-depth RNA-Seq within DESeq2 or edgeR
8.8 years ago Aaron Lun ★ 29k
4
votes
1
reply
2.1k
views
Answer: A: Which is the best design matrix to compare a timecourse between two conditions?
8.8 years ago Aaron Lun ★ 29k
1
vote
1
reply
1.2k
views
Answer: A: Removinf Batch effect in EDGE-R
8.8 years ago Aaron Lun ★ 29k
1
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0
replies
1.6k
views
Comment: C: How to define contrasts for expression changes over time
8.8 years ago Aaron Lun ★ 29k
0
votes
0
replies
1.1k
views
Answer: A: edgeR minor bug in normalizeChIPtoInput
8.8 years ago Aaron Lun ★ 29k
0
votes
0
replies
1.3k
views
Answer: A: diffHic count data
8.8 years ago Aaron Lun ★ 29k
1
vote
0
replies
1.6k
views
Answer: A: How to define contrasts for expression changes over time
8.8 years ago Aaron Lun ★ 29k
0
votes
0
replies
2.9k
views
Comment: C: Limma: Defining the design matrix of a linear mixed model
8.8 years ago Aaron Lun ★ 29k
1
vote
0
replies
2.1k
views
Comment: C: Use csaw to build matrix for heatmap?
8.8 years ago Aaron Lun ★ 29k
0
votes
1
reply
2.5k
views
Comment: C: Differential Pol2 pausing analysis
8.8 years ago Aaron Lun ★ 29k
1
vote
1
reply
1.9k
views
Answer: A: sc-RNA data analysis using scater
8.8 years ago Aaron Lun ★ 29k
0
votes
1
reply
2.5k
views
Comment: C: Differential Pol2 pausing analysis
8.8 years ago Aaron Lun ★ 29k
1
vote
0
replies
2.0k
views
Answer: A: Hill in P-value distribution for heterogenous ChIP-seq samples
8.8 years ago Aaron Lun ★ 29k
3
votes
1
reply
2.5k
views
Answer: A: Differential Pol2 pausing analysis
8.8 years ago Aaron Lun ★ 29k
2,880 results • Page 30 of 58
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