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Answer: A: multiple comparison using limma
8.8 years ago Aaron Lun ★ 29k
2
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Answer: A: Use csaw to build matrix for heatmap?
8.8 years ago Aaron Lun ★ 29k
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Answer: A: Scran normalization error with computeSumFactors
8.8 years ago Aaron Lun ★ 29k
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Comment: C: RNA-seq paired analysis design
8.8 years ago Aaron Lun ★ 29k
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5.3k
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Comment: C: Design question limma multi variables
8.8 years ago Aaron Lun ★ 29k
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Answer: A: Design question limma multi variables
8.8 years ago Aaron Lun ★ 29k
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5.3k
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Comment: C: Design question limma multi variables
8.8 years ago Aaron Lun ★ 29k
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Answer: A: limma batch question
8.8 years ago Aaron Lun ★ 29k
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2.9k
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Comment: C: Limma: Defining the design matrix of a linear mixed model
8.8 years ago Aaron Lun ★ 29k
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Comment: C: Limma: Defining the design matrix of a linear mixed model
8.8 years ago Aaron Lun ★ 29k
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2.0k
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Comment: C: Confusing: identify differentially expression genes (DEG) perturbed by a drug in
8.8 years ago Aaron Lun ★ 29k
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1
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2.0k
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Comment: C: Confusing: identify differentially expression genes (DEG) perturbed by a drug in
8.8 years ago Aaron Lun ★ 29k
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Comment: C: Limma: Defining the design matrix of a linear mixed model
8.8 years ago Aaron Lun ★ 29k
2
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2.5k
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Answer: A: error in Limma analysis - estimated df (df.0) for prior value of variance (s2.po
8.8 years ago Aaron Lun ★ 29k
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2.1k
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Comment: C: How to extract common genes that are DE in each comparisons?
8.8 years ago Aaron Lun ★ 29k
1
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2.1k
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Answer: A: How to extract common genes that are DE in each comparisons?
8.8 years ago Aaron Lun ★ 29k
5
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Answer: A: One replicate (one-color OR two-color) is enough to use Limma?
8.8 years ago Aaron Lun ★ 29k
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Comment: C: searching for edgeR version 2.2.6
8.8 years ago Aaron Lun ★ 29k
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2.2k
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Answer: A: How to remmove duplicated paired end alignments
8.8 years ago Aaron Lun ★ 29k
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10k
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Comment: C: convert data frame of Entrez IDs to Gene Symbols
8.9 years ago Aaron Lun ★ 29k
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1.6k
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Comment: C: Including novel transcripts and antisense into differential gene expression anal
8.9 years ago Aaron Lun ★ 29k
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10k
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Answer: A: convert data frame of Entrez IDs to Gene Symbols
8.9 years ago Aaron Lun ★ 29k
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1
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1.6k
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Comment: C: Including novel transcripts and antisense into differential gene expression anal
8.9 years ago Aaron Lun ★ 29k
3
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1.7k
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Answer: A: Aggregate read counts by non-uniform overlapping sliding windows
8.9 years ago Aaron Lun ★ 29k
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1.6k
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Answer: A: Including novel transcripts and antisense into differential gene expression anal
8.9 years ago Aaron Lun ★ 29k
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2.9k
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Comment: C: edgeR quasi-likelihood dispersion estimates
8.9 years ago Aaron Lun ★ 29k
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2.9k
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Answer: A: edgeR quasi-likelihood dispersion estimates
8.9 years ago Aaron Lun ★ 29k
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2.6k
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Comment: C: Interpretation of cross correlation plot to determine fragment length
8.9 years ago Aaron Lun ★ 29k
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2.6k
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Answer: A: Interpretation of cross correlation plot to determine fragment length
8.9 years ago Aaron Lun ★ 29k
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1.8k
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Answer: A: limma -- posthoc analysis when design factor has 3 levels
8.9 years ago Aaron Lun ★ 29k
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1.2k
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Comment: C: R script for getting Common DEG genes from all comparisons by limma analysis
8.9 years ago Aaron Lun ★ 29k
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1.0k
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Answer: A: limma: bug in fitFDist()
8.9 years ago Aaron Lun ★ 29k
2
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803
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Answer: A: R script for construction of VennDiagram for eight sample
8.9 years ago Aaron Lun ★ 29k
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2.7k
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Comment: C: design for edgeR
8.9 years ago Aaron Lun ★ 29k
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1.6k
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Answer: A: featureCounts on read 1 of a paired-end experiment
8.9 years ago Aaron Lun ★ 29k
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2.7k
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Comment: C: design for edgeR
8.9 years ago Aaron Lun ★ 29k
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1
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2.7k
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Comment: C: design for edgeR
8.9 years ago Aaron Lun ★ 29k
1
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2.7k
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Answer: A: design for edgeR
8.9 years ago Aaron Lun ★ 29k
4
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5.4k
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Answer: A: Rsubread featureCounts with strand information
8.9 years ago Aaron Lun ★ 29k
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1.5k
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Comment: C: What are all the different methods available for identifying the DEG?
8.9 years ago Aaron Lun ★ 29k
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1
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2.7k
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Comment: C: design for edgeR
8.9 years ago Aaron Lun ★ 29k
1
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1.4k
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Answer: A: RNA-seq: EdgeR's togtags table not correlating to htseq-count's CPM values
8.9 years ago Aaron Lun ★ 29k
1
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4.0k
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Comment: C: How to use diffHiC with existing contact matrices?
8.9 years ago Aaron Lun ★ 29k
2
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4.0k
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Answer: A: Limma fixed and random effects
8.9 years ago Aaron Lun ★ 29k
1
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2.1k
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Answer: A: DEG analysis by limma
8.9 years ago Aaron Lun ★ 29k
2
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1
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4.6k
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Answer: A: voom on normalised counts
8.9 years ago Aaron Lun ★ 29k
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1.8k
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Comment: C: diffHic: minimum counts per bin
8.9 years ago Aaron Lun ★ 29k
1
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1
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1.8k
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Comment: C: diffHic: minimum counts per bin
8.9 years ago Aaron Lun ★ 29k
1
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4.0k
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Comment: C: How to use diffHiC with existing contact matrices?
8.9 years ago Aaron Lun ★ 29k
0
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1
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1.8k
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Comment: C: diffHic: minimum counts per bin
8.9 years ago Aaron Lun ★ 29k
2,880 results • Page 31 of 58
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