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2
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0
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1.2k
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Answer: A: cpm filtering edgeR
9.0 years ago Aaron Lun ★ 29k
1
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1
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1.8k
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Answer: A: edgeR and variance
9.0 years ago Aaron Lun ★ 29k
2
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0
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3.0k
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Answer: A: edgeR: Unusual BCV plot
9.0 years ago Aaron Lun ★ 29k
1
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1
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1.8k
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Answer: A: diffHic: minimum counts per bin
9.0 years ago Aaron Lun ★ 29k
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1
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4.0k
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Comment: C: How to use diffHiC with existing contact matrices?
9.0 years ago Aaron Lun ★ 29k
1
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1
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4.0k
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Comment: C: How to use diffHiC with existing contact matrices?
9.0 years ago Aaron Lun ★ 29k
0
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3.1k
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Comment: C: limma + voom + sva + complex RNA-seq design?
9.0 years ago Aaron Lun ★ 29k
0
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0
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3.1k
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Comment: C: limma + voom + sva + complex RNA-seq design?
9.0 years ago Aaron Lun ★ 29k
1
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2
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3.1k
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Answer: A: limma + voom + sva + complex RNA-seq design?
9.0 years ago Aaron Lun ★ 29k
3
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1
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15k
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Answer: A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
9.0 years ago Aaron Lun ★ 29k
2
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2
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4.0k
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Answer: A: How to use diffHiC with existing contact matrices?
9.0 years ago Aaron Lun ★ 29k
1
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0
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2.1k
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Comment: C: DEG analysis of chemo-sensitive vs resistance by limma
9.0 years ago Aaron Lun ★ 29k
0
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0
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1.1k
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Comment: C: EdgeR multiple factor design question
9.0 years ago Aaron Lun ★ 29k
0
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0
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1.1k
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Comment: C: EdgeR multiple factor design question
9.0 years ago Aaron Lun ★ 29k
1
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0
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1.1k
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Answer: A: EdgeR multiple factor design question
9.0 years ago Aaron Lun ★ 29k
1
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0
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771
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Answer: A: EdgeR two condition problem
9.0 years ago Aaron Lun ★ 29k
1
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0
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1.0k
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Answer: A: Limma and DEG
9.0 years ago Aaron Lun ★ 29k
0
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0
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1.8k
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Comment: C: Re-use limma beta coefficients
9.0 years ago Aaron Lun ★ 29k
1
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2
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1.2k
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Answer: A: readDGE function does not exist
9.0 years ago Aaron Lun ★ 29k
1
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0
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1.8k
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Answer: A: Re-use limma beta coefficients
9.0 years ago Aaron Lun ★ 29k
1
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0
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5.7k
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Comment: C: Error in estimateGLMCommonDisp and glmFit
9.0 years ago Aaron Lun ★ 29k
1
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0
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5.7k
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Answer: A: Error in estimateGLMCommonDisp and glmFit
9.0 years ago Aaron Lun ★ 29k
1
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0
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3.9k
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Answer: A: How to make a (limma) heatmap displaying gene ID's as rownames
9.0 years ago Aaron Lun ★ 29k
1
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0
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714
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Answer: A: Limma More than two comparisons
9.0 years ago Aaron Lun ★ 29k
0
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0
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1.5k
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Comment: C: Interpreting strand orientation plots in diffHic
9.0 years ago Aaron Lun ★ 29k
0
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0
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1.2k
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Comment: C: F test for two phenotypic and multiple phenotypic categories.
9.0 years ago Aaron Lun ★ 29k
0
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1
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1.2k
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Answer: A: F test for two phenotypic and multiple phenotypic categories.
9.0 years ago Aaron Lun ★ 29k
1
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1
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1.5k
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Answer: A: Interpreting strand orientation plots in diffHic
9.0 years ago Aaron Lun ★ 29k
1
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1
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1.3k
views
Answer: A: Removing trended biases between HiC libraries
9.0 years ago Aaron Lun ★ 29k
1
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0
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3.2k
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Comment: C: edgeR: Tagwise dispersion when using offset matrix
9.0 years ago Aaron Lun ★ 29k
3
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2
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3.2k
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Answer: A: edgeR: Tagwise dispersion when using offset matrix
9.0 years ago Aaron Lun ★ 29k
1
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0
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850
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Answer: A: Limma MDS plot donor effect
9.0 years ago Aaron Lun ★ 29k
0
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0
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1.2k
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Comment: C: Help with limma contrast/design matrices
9.0 years ago Aaron Lun ★ 29k
0
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0
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1.9k
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Comment: C: contrast matrix design for a comparison (trend) of drug concentrations
9.0 years ago Aaron Lun ★ 29k
0
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0
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2.1k
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Answer: A: edgeR estimateGLMRobustDisp fails with and error
9.0 years ago Aaron Lun ★ 29k
0
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1
reply
1.9k
views
Answer: A: contrast matrix design for a comparison (trend) of drug concentrations
9.0 years ago Aaron Lun ★ 29k
0
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0
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1.9k
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Comment: C: contrast matrix design for a comparison (trend) of drug concentrations
9.0 years ago Aaron Lun ★ 29k
0
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1
reply
1.9k
views
Comment: C: edgeR time series DMSO correction
9.0 years ago Aaron Lun ★ 29k
3
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0
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1.4k
views
Answer: A: Discrepancy in the output of decideTests (total not equal to sum of up/down gene
9.0 years ago Aaron Lun ★ 29k
0
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0
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2.7k
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Comment: C: Adjusting for procedural effect and deciding on statistical test
9.0 years ago Aaron Lun ★ 29k
0
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0
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2.7k
views
Comment: C: Adjusting for procedural effect and deciding on statistical test
9.0 years ago Aaron Lun ★ 29k
0
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1
reply
1.5k
views
Answer: A: edgeR constrast drug treatments and time points
9.1 years ago Aaron Lun ★ 29k
0
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1
reply
2.4k
views
Comment: C: duplicateCorrelation and Pearson Correlation
9.1 years ago Aaron Lun ★ 29k
2
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1
reply
2.7k
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Answer: A: Adjusting for procedural effect and deciding on statistical test
9.1 years ago Aaron Lun ★ 29k
0
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1
reply
2.7k
views
Comment: C: Adjusting for procedural effect and deciding on statistical test
9.1 years ago Aaron Lun ★ 29k
1
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0
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1.9k
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Answer: A: limma voom analysis with multiple comparisons
9.1 years ago Aaron Lun ★ 29k
1
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0
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3.7k
views
Comment: C: Analysis of RNA-seq time series with edgeR
9.1 years ago Aaron Lun ★ 29k
1
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1
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3.7k
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Answer: A: Analysis of RNA-seq time series with edgeR
9.1 years ago Aaron Lun ★ 29k
1
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0
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1.6k
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Comment: C: Paired RNA-seq experiment with 3 factors using duplicateCorrelation
9.1 years ago Aaron Lun ★ 29k
1
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1
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1.8k
views
Answer: A: Limma design matrix for three-treatment crossover study
9.1 years ago Aaron Lun ★ 29k
2,880 results • Page 32 of 58
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