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4
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1
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4.6k
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Answer: A: Optimal cluster number identification using buildSNNgraph and igraph clusters
5.5 years ago Aaron Lun ★ 29k
0
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0
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8.1k
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Comment: C: Downsample or not to downsample?
5.5 years ago Aaron Lun ★ 29k
5
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1
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8.1k
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Answer: A: Downsample or not to downsample?
5.5 years ago Aaron Lun ★ 29k
0
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0
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2.7k
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Comment: C: SingleR analysis with integrated data
5.6 years ago Aaron Lun ★ 29k
0
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0
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1.3k
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Answer: A: How to load counts from existing count matrices in diffHic package
5.6 years ago Aaron Lun ★ 29k
0
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0
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1.2k
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Answer: A: treating RNA-seq gene expression data in cpm for edgeR
5.6 years ago Aaron Lun ★ 29k
3
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1
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2.0k
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Answer: A: featAssayPlotDefaults does not work for SummarizedExperiment object
5.6 years ago Aaron Lun ★ 29k
3
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0
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2.4k
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Answer: A: Best practice for correlating scRNA seq to bulkRNA seq data
5.6 years ago Aaron Lun ★ 29k
1
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0
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1.6k
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Answer: A: batchelor batch correction correction runs into errors
5.6 years ago Aaron Lun ★ 29k
2
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1
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2.0k
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Answer: A: MNN batch correction of pre-computed PCA
5.6 years ago Aaron Lun ★ 29k
0
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0
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2.1k
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Comment: C: how to integrate multiple samples from ADT-seq (CITE-seq) with fastMNN
5.6 years ago Aaron Lun ★ 29k
0
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0
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1.5k
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Answer: A: Multi-level experiment with continuous varibles and confounders in limma
5.6 years ago Aaron Lun ★ 29k
0
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0
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1.0k
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Answer: A: Comparison of cydar to other Bioconductor packages for flow cytometry analysis
5.6 years ago Aaron Lun ★ 29k
2
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0
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1.1k
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Answer: A: edgeR - Correct approach to compare abundances of genomic regions?
5.6 years ago Aaron Lun ★ 29k
0
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1
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2.9k
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Comment: C: Multi-level experiment with limma
5.6 years ago Aaron Lun ★ 29k
0
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1
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2.2k
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Comment: C: SingleR analysis with just a subset of Immgen data
5.6 years ago Aaron Lun ★ 29k
0
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1
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2.2k
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Comment: C: SingleR analysis with just a subset of Immgen data
5.6 years ago Aaron Lun ★ 29k
0
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1
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2.2k
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Comment: C: SingleR analysis with just a subset of Immgen data
5.6 years ago Aaron Lun ★ 29k
1
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0
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1.7k
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Answer: A: csaw differential binding visualization
5.6 years ago Aaron Lun ★ 29k
0
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1
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2.2k
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Answer: A: SingleR analysis with just a subset of Immgen data
5.6 years ago Aaron Lun ★ 29k
1
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1
reply
2.1k
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Answer: A: how to integrate multiple samples from ADT-seq (CITE-seq) with fastMNN
5.6 years ago Aaron Lun ★ 29k
0
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1
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4.0k
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Answer: A: Problem installing and loading the package SingleCellExperiment
5.6 years ago Aaron Lun ★ 29k
0
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0
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1.6k
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Comment: C: How can doubletCell() scores be converted to single/doublet annotation?
5.6 years ago Aaron Lun ★ 29k
0
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0
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1.9k
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Comment: C: Issues with normalizing viral-infected single cell data
5.6 years ago Aaron Lun ★ 29k
0
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1
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1.9k
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Answer: A: Issues with normalizing viral-infected single cell data
5.6 years ago Aaron Lun ★ 29k
0
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1
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1.6k
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Answer: A: How can doubletCell() scores be converted to single/doublet annotation?
5.6 years ago Aaron Lun ★ 29k
2
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0
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3.6k
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Answer: A: Quality control in SingleCellExperiment
5.7 years ago Aaron Lun ★ 29k
0
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1
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2.9k
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Answer: A: How to perform batch correction on scRNA-seq with confounding plate effects?
5.7 years ago Aaron Lun ★ 29k
0
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0
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1.9k
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Answer: A: Assay choice for cell type annotation using SingleR when batch effect present in
5.7 years ago Aaron Lun ★ 29k
0
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1
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2.4k
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Comment: C: DropletUtils::swappedDrops more cells than using Read10x with filtered_feature_b
5.7 years ago Aaron Lun ★ 29k
0
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1
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2.4k
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Answer: A: DropletUtils::swappedDrops more cells than using Read10x with filtered_feature_b
5.7 years ago Aaron Lun ★ 29k
0
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0
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2.4k
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Comment: C: DropletUtils::swappedDrops more cells than using Read10x with filtered_feature_b
5.7 years ago Aaron Lun ★ 29k
1
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0
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30k
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Comment: C: Conversion of LogFC to FC
5.7 years ago Aaron Lun ★ 29k
0
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1
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2.4k
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Comment: C: DropletUtils::swappedDrops more cells than using Read10x with filtered_feature_b
5.7 years ago Aaron Lun ★ 29k
0
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1
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5.6k
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Comment: C: R package for single-cell RNA-seq data from fastq to matrix
5.7 years ago Aaron Lun ★ 29k
2
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1
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5.6k
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Answer: A: R package for single-cell RNA-seq data from fastq to matrix
5.7 years ago Aaron Lun ★ 29k
2
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1
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2.4k
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Answer: A: Bias towards significantly negative logFCs in ATAC-Seq differential chromatin op
5.7 years ago Aaron Lun ★ 29k
0
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1
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2.4k
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Comment: C: Bias towards significantly negative logFCs in ATAC-Seq differential chromatin op
5.7 years ago Aaron Lun ★ 29k
0
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2
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2.9k
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Answer: A: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
5.8 years ago Aaron Lun ★ 29k
2
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2
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2.9k
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Comment: C: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
5.8 years ago Aaron Lun ★ 29k
2
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0
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4.1k
views
Comment: C: VST for scRNA-seq
5.8 years ago Aaron Lun ★ 29k
1
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1
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1.9k
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Comment: C: Impose minimum restrictions on correlations in SingleR
5.8 years ago Aaron Lun ★ 29k
3
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1
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4.1k
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Comment: C: VST for scRNA-seq
5.8 years ago Aaron Lun ★ 29k
0
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2
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2.1k
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Answer: A: analysis of multiple time points * 2 replicates of scRNA-seq
5.8 years ago Aaron Lun ★ 29k
1
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1
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1.9k
views
Answer: A: Impose minimum restrictions on correlations in SingleR
5.8 years ago Aaron Lun ★ 29k
1
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1
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1.6k
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Comment: C: Meeting guidelines to submit a package to Bioconductor
5.8 years ago Aaron Lun ★ 29k
0
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0
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2.2k
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Comment: C: fastMNN based correction for large multi-run experiment requires a similar popul
5.8 years ago Aaron Lun ★ 29k
3
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1
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2.2k
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Answer: A: fastMNN based correction for large multi-run experiment requires a similar popul
5.8 years ago Aaron Lun ★ 29k
2
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1
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2.6k
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Answer: A: Subclustering after MNN batch-correction
5.8 years ago Aaron Lun ★ 29k
4
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1
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1.1k
views
Answer: A: scRNA-seq analysis : the IDENTITY of the CLUSTERS across MULTIPLE EXPERIMENTS
5.8 years ago Aaron Lun ★ 29k
2,880 results • Page 4 of 58
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