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Answer: A: Can't Load SingleCellExperiment Object
5.9 years ago Aaron Lun ★ 29k
1
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0
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1.6k
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Answer: A: Using Input Samples in ChIP-seq Differential Analysis (csaw/edgeR)
5.9 years ago Aaron Lun ★ 29k
0
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1
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1.4k
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Comment: C: Question about using sorted cell bulk microarray data (ImmGen) as reference
5.9 years ago Aaron Lun ★ 29k
1
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0
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36k
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Comment: C: How does edgeR cpm function calculate log(CPM) values?
6.0 years ago Aaron Lun ★ 29k
0
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1
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5.1k
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Answer: A: error in (function (classes, fdef, mtable) unable to find an inherited method f
6.0 years ago Aaron Lun ★ 29k
0
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0
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1.7k
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Answer: A: scater cbind for singlecellexperiment objects problem
6.0 years ago Aaron Lun ★ 29k
1
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0
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4.7k
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Comment: C: Limma residuals matrix
6.0 years ago Aaron Lun ★ 29k
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1
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1.6k
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Comment: C: edgeR lable shuffling permutation test
6.0 years ago Aaron Lun ★ 29k
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0
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1.9k
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Comment: C: Running DropletUtils::swappedDrops() on multiplexed samples from different libra
6.0 years ago Aaron Lun ★ 29k
1
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0
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2.8k
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Comment: C: interpreting FC values from glmTreat, especially unshrunk log-fold-changes
6.0 years ago Aaron Lun ★ 29k
0
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1
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1.9k
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Answer: A: Running DropletUtils::swappedDrops() on multiplexed samples from different libra
6.0 years ago Aaron Lun ★ 29k
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0
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2.2k
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Comment: C: PCA outliers cleaning
6.0 years ago Aaron Lun ★ 29k
2
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0
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1.2k
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Answer: A: EdgeR DGElist - equal counts between treatment and control incorrectly give sign
6.1 years ago Aaron Lun ★ 29k
0
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1
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1.8k
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Comment: C: Limma gives big p-values for large LFC
6.1 years ago Aaron Lun ★ 29k
3
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0
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1.6k
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Answer: A: could not find function "plotQC" in scater package
6.1 years ago Aaron Lun ★ 29k
0
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0
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1.3k
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Comment: C: Help with the output from mnnCorrect
6.1 years ago Aaron Lun ★ 29k
0
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1
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8.0k
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Comment: C: Further clarification on when not to use duplicateCorrelation with technical rep
6.1 years ago Aaron Lun ★ 29k
6
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1
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8.0k
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Answer: A: Further clarification on when not to use duplicateCorrelation with technical rep
6.1 years ago Aaron Lun ★ 29k
0
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0
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7.8k
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Comment: C: modeling zero-dominated RNA-seq with voom/limma and hurdle models (pscl)
6.1 years ago Aaron Lun ★ 29k
2
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0
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2.9k
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Answer: A: Batch Corrections (MNN) with TPM values
6.1 years ago Aaron Lun ★ 29k
4
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0
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1.9k
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Answer: A: Bug in estimateDisp of "edgeR"? "weights' matched by multiple actual arguments
6.1 years ago Aaron Lun ★ 29k
0
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1
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2.5k
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Comment: C: Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, wh
6.1 years ago Aaron Lun ★ 29k
1
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0
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1.2k
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Answer: A: Stouffer's method weights in scran::pairwiseWilcox
6.1 years ago Aaron Lun ★ 29k
0
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1
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1.9k
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Answer: A: Mitigating cell cycle effect in scRNA-seq using a blocking factor or design matr
6.1 years ago Aaron Lun ★ 29k
0
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0
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2.6k
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Comment: C: Different number of marker genes between same clusters
6.1 years ago Aaron Lun ★ 29k
0
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0
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1.0k
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Answer: A: diffHiC error in mergePairs.
6.1 years ago Aaron Lun ★ 29k
3
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0
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2.6k
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Answer: A: Different number of marker genes between same clusters
6.1 years ago Aaron Lun ★ 29k
1
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3
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2.5k
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Answer: A: Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, wh
6.2 years ago Aaron Lun ★ 29k
0
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0
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2.6k
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Comment: C: scanBam and countBam end prematurely under Windows 10
6.2 years ago Aaron Lun ★ 29k
2
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0
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3.4k
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Answer: A: DE analysis for 10X scRNA-seq data with multiple conditions and multiple replica
6.2 years ago Aaron Lun ★ 29k
0
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0
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2.4k
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Comment: C: analysis of multiple batches and multiple treatment conditions in scRNA-seq
6.2 years ago Aaron Lun ★ 29k
0
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0
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6.7k
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Comment: C: Using edgeR or DESeq2 to analyze allele-specific expression?
6.2 years ago Aaron Lun ★ 29k
2
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0
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2.4k
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Answer: A: Correct use of TMM / normalization factors based on large bins
6.2 years ago Aaron Lun ★ 29k
1
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1
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2.9k
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Comment: C: emptyDrops identified less non-empty cells with lower total UMI counts?
6.2 years ago Aaron Lun ★ 29k
2
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1
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2.9k
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Answer: A: emptyDrops identified less non-empty cells with lower total UMI counts?
6.2 years ago Aaron Lun ★ 29k
0
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1
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6.7k
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Comment: C: Using edgeR or DESeq2 to analyze allele-specific expression?
6.2 years ago Aaron Lun ★ 29k
0
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0
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1.8k
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Comment: C: Feature selection across batches in simpleSingleCell when spike-ins are not avai
6.2 years ago Aaron Lun ★ 29k
2
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1
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1.0k
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Answer: A: Is magrittr "%>%" acceptable in bioc packages?
6.3 years ago Aaron Lun ★ 29k
2
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0
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2.1k
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Answer: A: scran: excluding genes with extremely high expression during normalization?
6.3 years ago Aaron Lun ★ 29k
1
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2
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1.8k
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Comment: C: Feature selection across batches in simpleSingleCell when spike-ins are not avai
6.3 years ago Aaron Lun ★ 29k
0
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0
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1.6k
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Answer: A: conda install of diffHic
6.3 years ago Aaron Lun ★ 29k
3
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1
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1.8k
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Answer: A: Feature selection across batches in simpleSingleCell when spike-ins are not avai
6.3 years ago Aaron Lun ★ 29k
1
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0
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1.0k
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Answer: A: Feature selection across batches in simpleSingleCell "Correcting batch effects"
6.3 years ago Aaron Lun ★ 29k
0
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0
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1.4k
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Comment: C: k argument in buildSNNGraph
6.3 years ago Aaron Lun ★ 29k
0
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1
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1.6k
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Comment: C: DropletUtils' emptyDrops() fails with non-integer counts
6.3 years ago Aaron Lun ★ 29k
0
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1
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1.6k
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Answer: A: DropletUtils' emptyDrops() fails with non-integer counts
6.3 years ago Aaron Lun ★ 29k
0
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1
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2.4k
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Comment: C: analysis of multiple batches and multiple treatment conditions in scRNA-seq
6.3 years ago Aaron Lun ★ 29k
2
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0
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3.1k
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Comment: C: RNA-seq normalization without filtering
6.3 years ago Aaron Lun ★ 29k
1
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1
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1.4k
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Answer: A: k argument in buildSNNGraph
6.3 years ago Aaron Lun ★ 29k
0
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0
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2.4k
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Comment: C: Preprocessing in scran::doubletCells
6.3 years ago Aaron Lun ★ 29k
2,880 results • Page 5 of 58
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