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4
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1
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5.5k
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Answer: A: Error with DropletUtils::EmptyDrops()
6.3 years ago Aaron Lun ★ 29k
0
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2
replies
2.4k
views
Answer: A: Error while running normOffsets in diffhic
6.3 years ago Aaron Lun ★ 29k
0
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1
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2.4k
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Comment: C: Preprocessing in scran::doubletCells
6.3 years ago Aaron Lun ★ 29k
2
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0
replies
1.5k
views
Answer: A: Limma Design matrix for time series+treatment+batch effect
6.3 years ago Aaron Lun ★ 29k
1
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1
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2.4k
views
Answer: A: Preprocessing in scran::doubletCells
6.3 years ago Aaron Lun ★ 29k
0
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0
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4.5k
views
Comment: C: How to convert large gene counts data into matrix?
6.3 years ago Aaron Lun ★ 29k
0
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0
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1.2k
views
Comment: C: Feedback on edgeR model setup: identifying sex-by-tissue effects
6.3 years ago Aaron Lun ★ 29k
1
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1
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1.3k
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Answer: A: rotPlaid error "Error in if (x.min >= x.max) { : missing value where TRUE/FALSE
6.3 years ago Aaron Lun ★ 29k
3
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1
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1.3k
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Answer: A: Two-way interaction, linear redundancy
6.3 years ago Aaron Lun ★ 29k
4
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1
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3.6k
views
Answer: A: using limma and edgeR for differential expression of Drop-seq/10xGenomics scRNA-
6.3 years ago Aaron Lun ★ 29k
3
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1
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1.3k
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Answer: A: normalization of RNA-seq data after over-expressing the transcription factors
6.3 years ago Aaron Lun ★ 29k
0
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1
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3.6k
views
Comment: C: using limma and edgeR for differential expression of Drop-seq/10xGenomics scRNA-
6.3 years ago Aaron Lun ★ 29k
0
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1
reply
1.3k
views
Comment: C: normalization of RNA-seq data after over-expressing the transcription factors
6.3 years ago Aaron Lun ★ 29k
1
vote
1
reply
1.2k
views
Answer: A: Feedback on edgeR model setup: identifying sex-by-tissue effects
6.3 years ago Aaron Lun ★ 29k
0
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0
replies
1.7k
views
Comment: C: diffHic presplit_map.py --sig option for HiC libraries prepared with restriction
6.3 years ago Aaron Lun ★ 29k
0
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1
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1.7k
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Answer: A: diffHic presplit_map.py --sig option for HiC libraries prepared with restriction
6.3 years ago Aaron Lun ★ 29k
0
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0
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1.7k
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Comment: C: Limma for cell components effect on response
6.3 years ago Aaron Lun ★ 29k
1
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1
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1.5k
views
Answer: A: diffHic presplit_map.py pysam.SamtoolsError
6.3 years ago Aaron Lun ★ 29k
0
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1
reply
1.7k
views
Answer: A: Limma for cell components effect on response
6.4 years ago Aaron Lun ★ 29k
1
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0
replies
2.7k
views
Comment: C: Difference of difference, paired design
6.4 years ago Aaron Lun ★ 29k
2
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1
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1.5k
views
Comment: C: EdgeR - Model matrix for complex model similar to user guide 3.5 example - but m
6.4 years ago Aaron Lun ★ 29k
0
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1
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3.2k
views
Comment: C: adjusting for confounding effects in edgeR
6.4 years ago Aaron Lun ★ 29k
0
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1
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3.2k
views
Comment: C: adjusting for confounding effects in edgeR
6.4 years ago Aaron Lun ★ 29k
0
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0
replies
1.4k
views
Comment: C: Complex multifactorial design with random effects in Limma/voom
6.4 years ago Aaron Lun ★ 29k
3
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1
reply
1.4k
views
Answer: A: Complex multifactorial design with random effects in Limma/voom
6.4 years ago Aaron Lun ★ 29k
0
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0
replies
2.3k
views
Comment: C: scRNA-seq : Classification of cell cycle phase
6.4 years ago Aaron Lun ★ 29k
0
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1
reply
1.6k
views
Comment: C: Using output from normalizeBatch() outside of cydar package
6.4 years ago Aaron Lun ★ 29k
0
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1
reply
3.0k
views
Comment: C: scRNA-seq : runPCA() and denoisePCA()
6.4 years ago Aaron Lun ★ 29k
0
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1
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3.0k
views
Comment: C: scRNA-seq : runPCA() and denoisePCA()
6.4 years ago Aaron Lun ★ 29k
3
votes
2
replies
2.3k
views
Answer: A: scRNA-seq : Classification of cell cycle phase
6.4 years ago Aaron Lun ★ 29k
3
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1
reply
3.0k
views
Answer: A: scRNA-seq : runPCA() and denoisePCA()
6.4 years ago Aaron Lun ★ 29k
0
votes
1
reply
1.6k
views
Answer: A: Using output from normalizeBatch() outside of cydar package
6.4 years ago Aaron Lun ★ 29k
0
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1
reply
2.3k
views
Comment: C: number of cell clusters in scRNA-seq
6.4 years ago Aaron Lun ★ 29k
1
vote
1
reply
2.3k
views
Answer: A: number of cell clusters in scRNA-seq
6.4 years ago Aaron Lun ★ 29k
1
vote
0
replies
1.7k
views
Comment: C: Re-numbering blocking IDs on paired samples with duplicateCorrelation or design
6.4 years ago Aaron Lun ★ 29k
2
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1
reply
1.9k
views
Answer: A: Majority upregulated genes in edgeR
6.4 years ago Aaron Lun ★ 29k
0
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0
replies
1.9k
views
Comment: C: Time course experiment using limma with voom
6.4 years ago Aaron Lun ★ 29k
1
vote
0
replies
1.9k
views
Comment: C: Combining counts from non-replicate samples in RNA-Seq analysis for a synergisti
6.4 years ago Aaron Lun ★ 29k
1
vote
1
reply
3.2k
views
Answer: A: adjusting for confounding effects in edgeR
6.4 years ago Aaron Lun ★ 29k
4
votes
1
reply
1.9k
views
Answer: A: Combining counts from non-replicate samples in RNA-Seq analysis for a synergisti
6.4 years ago Aaron Lun ★ 29k
0
votes
2
replies
3.1k
views
Comment: C: differential expression between clusters (in distinct "treatments") in scRNAseq
6.4 years ago Aaron Lun ★ 29k
0
votes
1
reply
1.9k
views
Comment: C: Time course experiment using limma with voom
6.4 years ago Aaron Lun ★ 29k
1
vote
1
reply
1.9k
views
Answer: A: Time course experiment using limma with voom
6.4 years ago Aaron Lun ★ 29k
3
votes
1
reply
1.7k
views
Answer: A: Re-numbering blocking IDs on paired samples with duplicateCorrelation or design
6.4 years ago Aaron Lun ★ 29k
0
votes
2
replies
3.1k
views
Answer: A: differential expression between clusters (in distinct "treatments") in scRNAseq
6.4 years ago Aaron Lun ★ 29k
0
votes
0
replies
1.8k
views
Comment: C: process bed/bedGraph files with the same coordinates for all the samples
updated 6.4 years ago by 68k • written 6.4 years ago by ★ 29k
1
vote
1
reply
4.5k
views
Answer: A: How to determine the cause of no difference between treatments in rnaseq?
6.4 years ago Aaron Lun ★ 29k
2
votes
0
replies
986
views
Answer: A: Small differences in limma with and without contrast matrix
6.4 years ago Aaron Lun ★ 29k
0
votes
0
replies
7.3k
views
Comment: C: How should I compare two different RNA-seq datasets using DESeq2 or EgdeR?
6.4 years ago Aaron Lun ★ 29k
0
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0
replies
978
views
Comment: C: cross-array comparison using limma fitted values
6.4 years ago Aaron Lun ★ 29k
2,880 results • Page 6 of 58
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