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2
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1.4k
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Answer: A: Modeling with 'discontinuous' continuous variables, or continuous variables with
6.7 years ago Aaron Lun ★ 29k
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Comment: C: subset samples for RNAseq differential analysis
6.7 years ago Aaron Lun ★ 29k
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Comment: C: Scran: Performing DE after cell-typle identifaction on the corrected and integra
6.7 years ago Aaron Lun ★ 29k
4
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Answer: A: subset samples for RNAseq differential analysis
6.7 years ago Aaron Lun ★ 29k
3
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3.1k
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Answer: A: Can I ignore the warnings in limma show " Coefficients not estimable" after batc
6.7 years ago Aaron Lun ★ 29k
0
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1
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3.1k
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Comment: C: Can I ignore the warnings in limma show " Coefficients not estimable" after batc
6.7 years ago Aaron Lun ★ 29k
0
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1
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3.1k
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Comment: C: Can I ignore the warnings in limma show " Coefficients not estimable" after batc
6.7 years ago Aaron Lun ★ 29k
0
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9.3k
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Comment: C: How to identify real cells in 10X RNA-seq ?
6.7 years ago Aaron Lun ★ 29k
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4.7k
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Comment: C: removeBatchEffect -- warnings and results
6.7 years ago Aaron Lun ★ 29k
2
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1.5k
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Answer: A: What`s new features in DropletUtils version 1.3.10 comapred to version 1.2.2
6.7 years ago Aaron Lun ★ 29k
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Comment: C: How to identify real cells in 10X RNA-seq ?
6.7 years ago Aaron Lun ★ 29k
4
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6.9k
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Answer: A: What are the methods to get count data per cell from single cell fastq given onl
6.7 years ago Aaron Lun ★ 29k
1
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2
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9.3k
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Comment: C: How to identify real cells in 10X RNA-seq ?
6.7 years ago Aaron Lun ★ 29k
1
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0
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2.1k
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Answer: A: Dunn Index for Clusters from scRNA-Seq
6.7 years ago Aaron Lun ★ 29k
1
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1
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1.2k
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Answer: A: edgeR design matrix not of full rank
6.7 years ago Aaron Lun ★ 29k
3
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9.3k
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Answer: A: How to identify real cells in 10X RNA-seq ?
6.7 years ago Aaron Lun ★ 29k
0
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0
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9.3k
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Comment: C: How to identify real cells in 10X RNA-seq ?
6.7 years ago Aaron Lun ★ 29k
0
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1
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9.3k
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Comment: C: How to identify real cells in 10X RNA-seq ?
6.7 years ago Aaron Lun ★ 29k
0
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1
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1.0k
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Answer: A: using limma for circular RNA analyses
6.7 years ago Aaron Lun ★ 29k
0
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0
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2.1k
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Answer: A: Dependence of FDR and P-values on sample size
6.7 years ago Aaron Lun ★ 29k
1
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2
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8.2k
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Comment: C: Differential Expression Analysis between conditions of single cell RNA-Seq
6.7 years ago Aaron Lun ★ 29k
2
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1.8k
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Comment: C: Paired analysis (tumor vs normal) at three different conditions with EdgeR
6.7 years ago Aaron Lun ★ 29k
0
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1
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1.3k
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Comment: C: Limma model with different intercepts/references
6.7 years ago Aaron Lun ★ 29k
0
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1.3k
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Comment: C: Limma model with different intercepts/references
6.7 years ago Aaron Lun ★ 29k
1
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2
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1.8k
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Answer: A: Paired analysis (tumor vs normal) at three different conditions with EdgeR
6.7 years ago Aaron Lun ★ 29k
1
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0
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2.6k
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Comment: C: Modularity values of clusters and Differential Expression in scRNA-Seq
6.7 years ago Aaron Lun ★ 29k
0
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0
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1.4k
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Comment: C: ~50% significant genes from RNA Microarray Differential Expression Analysis
6.7 years ago Aaron Lun ★ 29k
0
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1
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1.3k
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Comment: C: edgeR: request for additional guidelines for responsible limiting of genes that
6.7 years ago Aaron Lun ★ 29k
0
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1
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1.4k
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Comment: C: ~50% significant genes from RNA Microarray Differential Expression Analysis
6.7 years ago Aaron Lun ★ 29k
3
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0
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1.3k
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Answer: A: Limma model with different intercepts/references
6.7 years ago Aaron Lun ★ 29k
3
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1
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1.3k
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Answer: A: Paired design in limma
6.7 years ago Aaron Lun ★ 29k
1
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1
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1.3k
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Comment: C: edgeR: request for additional guidelines for responsible limiting of genes that
6.7 years ago Aaron Lun ★ 29k
1
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1
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1.5k
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Comment: C: Cydar's countCells tolerance parameter for arcsinh-transformed data
6.7 years ago Aaron Lun ★ 29k
0
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1
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2.6k
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Comment: C: Modularity values of clusters and Differential Expression in scRNA-Seq
6.7 years ago Aaron Lun ★ 29k
1
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1
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1.5k
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Answer: A: Cydar's countCells tolerance parameter for arcsinh-transformed data
6.7 years ago Aaron Lun ★ 29k
1
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1
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2.6k
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Answer: A: Modularity values of clusters and Differential Expression in scRNA-Seq
6.7 years ago Aaron Lun ★ 29k
1
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1
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2.3k
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Answer: A: Biological coefficient of variation(BCV) calculation in edgeR
6.7 years ago Aaron Lun ★ 29k
0
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0
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11k
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Comment: C: Design matrix for continuous independent variable in limma
6.7 years ago Aaron Lun ★ 29k
1
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1
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1.9k
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Comment: C: Foldchange values Limma
6.7 years ago Aaron Lun ★ 29k
2
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17k
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Comment: C: Usability of ERCC spike-ins in standard RNAseq experiments
6.7 years ago Aaron Lun ★ 29k
1
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2
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5.4k
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Answer: A: Adding labels on clusters in a t-SNE plot and changing colors
6.7 years ago Aaron Lun ★ 29k
2
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1
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1.7k
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Answer: A: scater error: invalid rownames length
6.7 years ago Aaron Lun ★ 29k
3
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0
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1.8k
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Answer: A: What is the "linear model" part used for in Limma?
6.7 years ago Aaron Lun ★ 29k
3
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1
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1.9k
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Answer: A: HDF5Array Single cell experiment objects - can on-disk files change?
6.8 years ago Aaron Lun ★ 29k
3
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0
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3.3k
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Answer: A: edgeR /DESeq2 normalization for differential expression in RNA-seq blood samples
6.8 years ago Aaron Lun ★ 29k
1
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1
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3.4k
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Comment: C: Silhouette Plots for Clustering Quality (Multiple Algorithm)
6.8 years ago Aaron Lun ★ 29k
1
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0
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1.5k
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Answer: A: Best practices for sharing RMarkdown-based supplemental PDFs?
6.8 years ago Aaron Lun ★ 29k
0
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0
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1.2k
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Answer: A: Highly uneven mapping rates and counts between samples
6.8 years ago Aaron Lun ★ 29k
1
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0
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3.7k
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Comment: C: Paired analysis setup using edgeR - follow up question
6.8 years ago Aaron Lun ★ 29k
0
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1
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3.7k
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Comment: C: Paired analysis setup using edgeR - follow up question
6.8 years ago Aaron Lun ★ 29k
2,880 results • Page 9 of 58
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