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Comment:
C: Which of these (raw count, scaled estimate, normalized_results ) data of TCGA is
4.1 years ago
Stephen Piccolo
▴ 590
1
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0
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1.2k
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Comment:
C: SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
5.1 years ago
Stephen Piccolo
▴ 590
0
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1
reply
1.2k
views
Comment:
C: SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
5.1 years ago
Stephen Piccolo
▴ 590
2
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1
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2.1k
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Comment:
C: Why is batch effect correction an option in SCAN.UPC normalization?
5.8 years ago
Stephen Piccolo
▴ 590
0
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1
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2.1k
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Comment:
C: Why is batch effect correction an option in SCAN.UPC normalization?
5.8 years ago
Stephen Piccolo
▴ 590
0
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1
reply
2.1k
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Comment:
C: Why is batch effect correction an option in SCAN.UPC normalization?
5.8 years ago
Stephen Piccolo
▴ 590
0
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1
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2.1k
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Comment:
C: Why is batch effect correction an option in SCAN.UPC normalization?
5.8 years ago
Stephen Piccolo
▴ 590
0
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1
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2.1k
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Comment:
C: Why is batch effect correction an option in SCAN.UPC normalization?
5.8 years ago
Stephen Piccolo
▴ 590
0
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0
replies
1.9k
views
Comment:
C: Transcript-level SCAN.UPC preprocessing for Affymetrix HTA 2.0 arrays
6.4 years ago
Stephen Piccolo
▴ 590
0
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1
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1.9k
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Comment:
C: Transcript-level SCAN.UPC preprocessing for Affymetrix HTA 2.0 arrays
6.4 years ago
Stephen Piccolo
▴ 590
1
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2
replies
1.9k
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Comment:
C: Transcript-level SCAN.UPC preprocessing for Affymetrix HTA 2.0 arrays
6.4 years ago
Stephen Piccolo
▴ 590
1
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0
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1.2k
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Comment:
C: Normalization of multiple HTA 2.0 arays using SCAN.UPC
6.5 years ago
Stephen Piccolo
▴ 590
0
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1
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1.2k
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Comment:
C: Normalization of multiple HTA 2.0 arays using SCAN.UPC
6.5 years ago
Stephen Piccolo
▴ 590
0
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1
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1.2k
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Comment:
C: ParseMetaFromGtfFile() from SCAN.UPC package fails to produce annotation file
6.7 years ago
Stephen Piccolo
▴ 590
1
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0
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3.9k
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Comment:
C: Problem about use of tcga rna-seq rsem gene results for regularized cox regressi
7.2 years ago
Stephen Piccolo
▴ 590
0
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0
replies
1.1k
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Comment:
C: UPC transposes output data
7.2 years ago
Stephen Piccolo
▴ 590
0
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1
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1.9k
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Comment:
C: About the best use of frma for several GEO Series
7.4 years ago
Stephen Piccolo
▴ 590
0
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1
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3.3k
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Comment:
C: Getting a flat metadata table from the XML files in TCGA: is it feasible?
7.5 years ago
Stephen Piccolo
▴ 590
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1
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2.4k
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Comment:
C: Question about Agilent microarray data measurement
7.5 years ago
Stephen Piccolo
▴ 590
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0
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2.4k
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Comment:
C: Question about Agilent microarray data measurement
7.5 years ago
Stephen Piccolo
▴ 590
0
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1
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2.4k
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Comment:
C: Question about Agilent microarray data measurement
7.5 years ago
Stephen Piccolo
▴ 590
0
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1
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2.4k
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Comment:
C: Question about Agilent microarray data measurement
7.5 years ago
Stephen Piccolo
▴ 590
0
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1
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2.4k
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Comment:
C: Question about Agilent microarray data measurement
7.5 years ago
Stephen Piccolo
▴ 590
0
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0
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1.5k
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Comment:
C: UPC method giving error for Microarray dataset
8.4 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
1.2k
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Comment:
C: Error with SCAN.UPC UPC_RNASeq method
8.4 years ago
Stephen Piccolo
▴ 590
1
vote
1
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14k
views
Comment:
C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
updated 8.8 years ago by
Steve Lianoglou
★ 13k • written 8.8 years ago by
Stephen Piccolo
▴ 590
0
votes
0
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1.5k
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Comment:
C: SCAN.UPC giving error for multiple input files
8.8 years ago
Stephen Piccolo
▴ 590
0
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1
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1.7k
views
Comment:
C: "Some normalization factors are zero" error on cn.mops
8.8 years ago
Stephen Piccolo
▴ 590
1
vote
1
reply
1.4k
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Comment:
C: Problem Installing SCAN.UPC
8.8 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
1.8k
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Comment:
C: Log2FC values very small with SCAN
8.8 years ago
Stephen Piccolo
▴ 590
1
vote
0
replies
4.2k
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Comment:
C: normalization with mas5
8.9 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
14k
views
Comment:
C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
9.0 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
14k
views
Comment:
C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
9.0 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
1.2k
views
Comment:
C: Filtering out lowly expressed genes on Affymetrix Gene ST arrays
9.0 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
14k
views
Comment:
C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
9.0 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
2.7k
views
Comment:
C: Possible ways of performing non-specific intensity filtering on Perfect-match on
9.1 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
2.7k
views
Comment:
C: Possible ways of performing non-specific intensity filtering on Perfect-match on
9.1 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
2.7k
views
Comment:
C: Possible ways of performing non-specific intensity filtering on Perfect-match on
9.1 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
2.7k
views
Comment:
C: Possible ways of performing non-specific intensity filtering on Perfect-match on
9.1 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
2.7k
views
Comment:
C: Possible ways of performing non-specific intensity filtering on Perfect-match on
9.1 years ago
Stephen Piccolo
▴ 590
1
vote
1
reply
2.7k
views
Comment:
C: Possible ways of performing non-specific intensity filtering on Perfect-match on
9.1 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
1.5k
views
Comment:
C: UPC and Sequence file to remove GC bias
9.1 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
1.6k
views
Comment:
C: SCAN UPC normalisation
9.1 years ago
Stephen Piccolo
▴ 590
1
vote
1
reply
5.2k
views
Comment:
C: How to use brainarray custom cdf with any bioconductor package?
9.1 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
5.2k
views
Comment:
C: How to use brainarray custom cdf with any bioconductor package?
9.1 years ago
Stephen Piccolo
▴ 590
0
votes
1
reply
5.2k
views
Comment:
C: How to use brainarray custom cdf with any bioconductor package?
9.1 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
14k
views
Comment:
C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
9.2 years ago
Stephen Piccolo
▴ 590
0
votes
2
replies
3.4k
views
Comment:
C: GeneChip Human Transcriptome Array 2.0 analysis in R for identifying possible di
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
Stephen Piccolo
▴ 590
0
votes
1
reply
2.5k
views
Comment:
C: frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
9.3 years ago
Stephen Piccolo
▴ 590
0
votes
0
replies
2.5k
views
Comment:
C: Questions about analysis of GeneChip Rat Gene 2.0 ST Array
9.3 years ago
Stephen Piccolo
▴ 590
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