User: andrew.j.skelton73

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Posts by andrew.j.skelton73

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Comment: C: Limma Singlet Moderated T-Test
... Thanks for suggesting the edgeR manual, it's nice to have a place where it's written down that I can point people to. I think it'd be useful for Limma to possibly output a warning where singlet comparisons are made stipulating a summary of what you've said. Thanks though for the comprehensive respon ...
written 4 months ago by andrew.j.skelton73290
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Limma Singlet Moderated T-Test
... Hi,  I only noticed this by chance, but it peaked my curiosity and couldn't find any documentation about it. I occasionally get asked about experiments where conditions are in singlet (no replication), and my typical mandate is to run the line of "no replication, no statistics", however in the case ...
limma written 4 months ago by andrew.j.skelton73290 • updated 10 weeks ago by Gordon Smyth32k
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Comment: C: VariantAnnotation Installation Failure
... Thanks for the insights Valerie. I'd cleared my R session and restarted R several times over about an hour trying to remedy this issue, but it seems this morning it installed no problem.  I think your latter speculation of `update.packages` makes sense, but would restarting R (within the same RStud ...
written 5 months ago by andrew.j.skelton73290
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VariantAnnotation Installation Failure
... Code and error: > source("https://bioconductor.org/biocLite.R") > biocLite("VariantAnnotation") BioC_mirror: https://bioconductor.org Using Bioconductor 3.5 (BiocInstaller 1.26.0), R 3.4.0 (2017-04-21). Installing package(s) ‘VariantAnnotation’ trying URL 'https://bioconductor.org/packages/3. ...
variantannotation written 5 months ago by andrew.j.skelton73290 • updated 5 months ago by Valerie Obenchain ♦♦ 6.4k
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Comment: C: Lumi Build Error
... Sorry about that - didn't notice that post.  ...
written 12 months ago by andrew.j.skelton73290
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(Closed) Lumi Build Error
... Hi,  There appears to be a build error with lumi - is this a known issue? Thanks,  Andrew ...
lumi written 12 months ago by andrew.j.skelton73290
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Comment: C: ComplexHeatmap - Annotation without a named vector
... Hi, I was wanting to do this without a named vector, is there any way for the col argument to automatically take the first element of the vector, for the first level in the data frame column, for example? ...
written 15 months ago by andrew.j.skelton73290
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ComplexHeatmap - Annotation without a named vector
... Hi,  I'm trying to make a few heatmaps dynamically, however I'm having a bit of trouble when trying to make the annotation object. According to the guides, you need to provide a named vector to the col argument in HeatmapAnnotation function, however I can't do that when generating dynamically, as ...
complexheatmap written 15 months ago by andrew.j.skelton73290 • updated 15 months ago by jokergoo110
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Minfi User Guide Build Problem?
... Hi,  I seem to remember the Minfi user guide being a tad more comprehensive than it currently is in Bioconductor, is this a known issue? Thanks,  ...
minfi written 17 months ago by andrew.j.skelton73290 • updated 17 months ago by Kasper Daniel Hansen6.3k
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Comment: C: Premature EOF within Description Field - Bos Taurus
... Hi Martin, thanks for the quick response and the rationale. I'll drop the listed maintainer an email to try and get this resolved. ...
written 19 months ago by andrew.j.skelton73290

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