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6
votes
2
replies
1.8k
views
Pseudo-bulk Limma Approaches
limma
updated 23 months ago by 50k • written 23 months ago by ▴ 370
12
votes
7
replies
4.4k
views
Plot ggplot2 and ggbio Images Together
ggplot2 ggbio cowplot
updated 4.7 years ago by ★ 1.5k • written 8.9 years ago by ▴ 370
2
votes
4
replies
1.6k
views
Crlmm HumanOmniExpress-24v1 Annotation not available
crlmm
updated 5.9 years ago by • 0 • written 8.7 years ago by ▴ 370
3
votes
4
replies
1.2k
views
Limma Singlet Moderated T-Test
limma
updated 6.6 years ago by 50k • written 6.8 years ago by ▴ 370
0
votes
1
reply
1.2k
views
Comment: C: Limma Singlet Moderated T-Test
6.8 years ago andrew.j.skelton73 ▴ 370
0
votes
1
reply
2.3k
views
Comment: C: VariantAnnotation Installation Failure
6.9 years ago andrew.j.skelton73 ▴ 370
3
votes
3
replies
2.3k
views
VariantAnnotation Installation Failure
VariantAnnotation
updated 6.9 years ago by ★ 6.8k • written 6.9 years ago by ▴ 370
0
votes
2
replies
6.4k
views
Comment: C: ComplexHeatmap - Annotation without a named vector
7.7 years ago andrew.j.skelton73 ▴ 370
3
votes
4
replies
6.4k
views
ComplexHeatmap - Annotation without a named vector
complexheatmap
updated 7.7 years ago by ▴ 200 • written 7.7 years ago by ▴ 370
1
vote
1
reply
1.3k
views
Minfi User Guide Build Problem?
minfi
updated 7.9 years ago by ★ 6.5k • written 7.9 years ago by ▴ 370
0
votes
1
reply
1.5k
views
Comment: C: Premature EOF within Description Field - Bos Taurus
8.0 years ago andrew.j.skelton73 ▴ 370
3
votes
3
replies
1.5k
views
Premature EOF within Description Field - Bos Taurus
biomart ensemble mart
updated 8.0 years ago by 25k • written 8.0 years ago by ▴ 370
0
votes
0
replies
2.2k
views
Answer: A: DESeq2 RNA analysis work flow with NCBI GEO data
8.2 years ago andrew.j.skelton73 ▴ 370
0
votes
0
replies
2.8k
views
Comment: C: estimateCellCounts Visualisations - Adjusting Beta Values for Plotting
8.2 years ago andrew.j.skelton73 ▴ 370
3
votes
7
replies
2.8k
views
estimateCellCounts Visualisations - Adjusting Beta Values for Plotting
minfi limma
updated 8.2 years ago by ▴ 20 • written 8.7 years ago by ▴ 370
0
votes
0
replies
2.8k
views
Comment: C: estimateCellCounts Visualisations - Adjusting Beta Values for Plotting
8.3 years ago andrew.j.skelton73 ▴ 370
1
vote
0
replies
1.8k
views
Answer: A: ggplot2 functions not inheriting?
8.3 years ago andrew.j.skelton73 ▴ 370
1
vote
1
reply
1.8k
views
ggplot2 functions not inheriting?
ggplot2
8.3 years ago andrew.j.skelton73 ▴ 370
0
votes
1
reply
2.4k
views
Comment: C: Cannot get ggbio autoplot to run successfully on R 3.2 (3.2.2 or 3.2.3)
8.3 years ago andrew.j.skelton73 ▴ 370
0
votes
0
replies
11k
views
Comment: C: DESeq2 and ComBat
8.3 years ago andrew.j.skelton73 ▴ 370
0
votes
1
reply
11k
views
Comment: C: DESeq2 and ComBat
8.3 years ago andrew.j.skelton73 ▴ 370
1
vote
0
replies
11k
views
Answer: A: DESeq2 and ComBat
8.3 years ago andrew.j.skelton73 ▴ 370
4
votes
4
replies
1.7k
views
Limma Nuisance Variable in an Interaction Model
limma model.matrix
updated 8.4 years ago by ★ 7.9k • written 8.4 years ago by ▴ 370
0
votes
0
replies
1.7k
views
Comment: C: Limma Nuisance Variable in an Interaction Model
8.4 years ago andrew.j.skelton73 ▴ 370
0
votes
0
replies
1.9k
views
Comment: C: Replicate for DESeq2
8.4 years ago andrew.j.skelton73 ▴ 370
0
votes
0
replies
1.4k
views
Comment: C: Paired Experimental Design
8.5 years ago andrew.j.skelton73 ▴ 370
0
votes
0
replies
1.4k
views
Comment: C: Paired Experimental Design
8.5 years ago andrew.j.skelton73 ▴ 370
3
votes
4
replies
1.4k
views
Paired Experimental Design
limma model.matrix
updated 8.5 years ago by 65k • written 8.5 years ago by ▴ 370
0
votes
0
replies
2.1k
views
Comment: C: Copy number analysis from Illumina 550K chip
8.5 years ago andrew.j.skelton73 ▴ 370
1
vote
0
replies
2.1k
views
Comment: C: Copy number analysis from Illumina 550K chip
8.5 years ago andrew.j.skelton73 ▴ 370
0
votes
0
replies
2.1k
views
Comment: C: Copy number analysis from Illumina 550K chip
8.5 years ago andrew.j.skelton73 ▴ 370
0
votes
1
reply
2.1k
views
Answer: A: Copy number analysis from Illumina 550K chip
8.5 years ago andrew.j.skelton73 ▴ 370
1
vote
0
replies
1.3k
views
Answer: A: Error genotyping with CRLMM
8.5 years ago andrew.j.skelton73 ▴ 370
0
votes
1
reply
6.9k
views
Comment: C: Limma: Continuous variable model designs
8.5 years ago andrew.j.skelton73 ▴ 370
5
votes
3
replies
6.9k
views
Limma: Continuous variable model designs
limma model.matrix
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 370
0
votes
0
replies
5.7k
views
Answer: A: calculating RPKM and VST by DEseq2
8.5 years ago andrew.j.skelton73 ▴ 370
0
votes
0
replies
2.4k
views
Answer: A: Illumina Sentrix HumanRef-8 Expression BeadChip annotation file
8.5 years ago andrew.j.skelton73 ▴ 370
0
votes
0
replies
1.0k
views
Comment: C: Correlation of expression of paralog genes
8.5 years ago andrew.j.skelton73 ▴ 370
1
vote
0
replies
3.8k
views
Answer: A: removeBatchEffect -- warnings and results
8.6 years ago andrew.j.skelton73 ▴ 370
0
votes
0
replies
842
views
Answer: A: [General] compare matrix to vector higher/lower
8.6 years ago andrew.j.skelton73 ▴ 370
0
votes
1
reply
2.1k
views
Comment: C: Zero values for bead backgrounds (reading idat files using Illuminaio)
8.6 years ago andrew.j.skelton73 ▴ 370
1
vote
1
reply
2.1k
views
Answer: A: Zero values for bead backgrounds (reading idat files using Illuminaio)
8.6 years ago andrew.j.skelton73 ▴ 370
0
votes
1
reply
2.0k
views
Comment: C: dexseq hg19- create gff
8.7 years ago andrew.j.skelton73 ▴ 370
0
votes
0
replies
950
views
Comment: C: use hg19 genome in dexseq
8.7 years ago andrew.j.skelton73 ▴ 370
0
votes
0
replies
1.8k
views
Comment: C: Inconsistent Annotations in illuminaHumanv3.db
8.7 years ago andrew.j.skelton73 ▴ 370
1
vote
1
reply
1.8k
views
Comment: C: Inconsistent Annotations in illuminaHumanv3.db
8.7 years ago andrew.j.skelton73 ▴ 370
0
votes
1
reply
1.8k
views
Comment: C: Inconsistent Annotations in illuminaHumanv3.db
8.7 years ago andrew.j.skelton73 ▴ 370
1
vote
0
replies
2.8k
views
Answer: A: (how) can I make heatmaps/PCA in DESeq2 using normalized counts from cummeRbund?
8.7 years ago andrew.j.skelton73 ▴ 370
0
votes
1
reply
2.2k
views
Comment: C: preprocessNoob + preprocessQuantile Error handling preprocessMethod
8.7 years ago andrew.j.skelton73 ▴ 370
0
votes
1
reply
14k
views
Comment: C: DESeq2 installation error
8.7 years ago andrew.j.skelton73 ▴ 370
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