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Comment: Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
11 days ago Tim Peters ▴ 200
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392
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Comment: Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
13 days ago Tim Peters ▴ 200
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2
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392
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Comment: Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
13 days ago Tim Peters ▴ 200
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3.8k
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Comment: Comment: How to get DMR for Infinium methylation EPIC v2
5 months ago Tim Peters ▴ 200
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3.8k
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Comment: Comment: How to get DMR for Infinium methylation EPIC v2
5 months ago Tim Peters ▴ 200
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3.8k
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Answer: Answer: How to get DMR for Infinium methylation EPIC v2
5 months ago Tim Peters ▴ 200
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1.6k
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Answer: Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
8 months ago Tim Peters ▴ 200
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996
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Comment: Comment: unable to access Annotationhub latest record
8 months ago Tim Peters ▴ 200
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1.8k
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Answer: Answer: CombineArrays for EPIC and EPIC V2
9 months ago Tim Peters ▴ 200
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0
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3.8k
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Answer: Answer: How to get DMR for Infinium methylation EPIC v2
9 months ago Tim Peters ▴ 200
1
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1
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996
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Answer: Answer: unable to access Annotationhub latest record
9 months ago Tim Peters ▴ 200
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1
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1.8k
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Answer: Answer: EPIC array hg38 annotation?
10 months ago Tim Peters ▴ 200
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4.5k
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Comment: Comment: bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype argument
11 months ago Tim Peters ▴ 200
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0
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1.9k
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Comment: Comment: Why is DMRcate not available for Bioconductor version 3.18?
12 months ago Tim Peters ▴ 200
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1.9k
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Comment: Comment: Why is DMRcate not available for Bioconductor version 3.18?
13 months ago Tim Peters ▴ 200
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781
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Answer: Answer: dmrcate needs at least two non-NA values to interpolate
16 months ago Tim Peters ▴ 200
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1.5k
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Comment: Comment: cpg.annotate() in DMRcate error
20 months ago Tim Peters ▴ 200
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1.5k
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Answer: Answer: cpg.annotate() in DMRcate error
20 months ago Tim Peters ▴ 200
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1.4k
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Answer: Answer: DMRcate: how to compare two comparisons and whether replicate is necessary
3.3 years ago Tim Peters ▴ 200
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1.4k
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Answer: A: Is it possible to run DMRcate directly with genomic positions instead of probe n
4.2 years ago Tim Peters ▴ 200
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1.6k
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Comment: C: Find genes in pathways enrichment
4.3 years ago Tim Peters ▴ 200
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955
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Comment: C: The smoothed Y statistic is far elevated from limma Y statistic, and parameter "
4.4 years ago Tim Peters ▴ 200
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2
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1.6k
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Comment: C: Find genes in pathways enrichment
4.4 years ago Tim Peters ▴ 200
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3.5k
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Comment: C: DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
4.6 years ago Tim Peters ▴ 200
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2.4k
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Comment: C: extract CpGs from DMRcate results
4.6 years ago Tim Peters ▴ 200
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2.4k
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Comment: C: extract CpGs from DMRcate results
4.6 years ago Tim Peters ▴ 200
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1
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2.4k
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Answer: A: extract CpGs from DMRcate results
4.6 years ago Tim Peters ▴ 200
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2.0k
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Comment: C: Significant DMRs in genes with no single significant CpG using limma
5.4 years ago Tim Peters ▴ 200
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2.0k
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Answer: A: Significant DMRs in genes with no single significant CpG using limma
5.4 years ago Tim Peters ▴ 200
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5.7k
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Comment: C: DMRcate results cg ID of significant DMR
5.4 years ago Tim Peters ▴ 200
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5.7k
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Comment: C: DMRcate results cg ID of significant DMR
5.4 years ago Tim Peters ▴ 200
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1.4k
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Comment: C: cpg.annotate model requirements
5.4 years ago Tim Peters ▴ 200
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3.5k
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Comment: C: DMRcate: incorporating covariates to find DMRs in methylation data?
6.0 years ago • updated 5.8 years ago Tim Peters ▴ 200
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1.9k
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Comment: C: DMRcate package :How to find the gene associated with coordinate
6.5 years ago Tim Peters ▴ 200
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1
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1.9k
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Comment: C: DMRcate package :How to find the gene associated with coordinate
6.5 years ago Tim Peters ▴ 200
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1
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2.2k
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Comment: C: Bumphunting for longitudinal data
6.6 years ago Tim Peters ▴ 200
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2.2k
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Answer: A: Bumphunting for longitudinal data
6.6 years ago Tim Peters ▴ 200
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1
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5.7k
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Comment: C: DMRcate results cg ID of significant DMR
7.1 years ago Tim Peters ▴ 200
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1
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5.7k
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Comment: C: DMRcate results cg ID of significant DMR
7.1 years ago Tim Peters ▴ 200
1
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1
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1.8k
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Answer: A: DMRcate results file ordered by genomic location and not Stouffer p-val?
7.6 years ago Tim Peters ▴ 200
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2
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4.5k
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Answer: A: bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype argument
7.7 years ago Tim Peters ▴ 200
0
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1
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4.5k
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Comment: C: bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype argument
7.7 years ago Tim Peters ▴ 200
0
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1
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4.5k
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Answer: A: bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype argument
7.7 years ago Tim Peters ▴ 200
0
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1
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4.5k
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Answer: A: bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype argument
7.8 years ago Tim Peters ▴ 200
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0
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3.5k
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Answer: A: minfi, lumi, methylumi, DMRcate installation error
7.8 years ago Tim Peters ▴ 200
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0
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1.7k
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Answer: A: DMRcate: Scaling factor for bandwidth
7.9 years ago Tim Peters ▴ 200
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1.7k
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Answer: A: DMRcate DMR.plot Turn Off Group Means
7.9 years ago Tim Peters ▴ 200
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1.3k
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Answer: A: DMRcate error in extractCoords function
8.0 years ago Tim Peters ▴ 200
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1.1k
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Answer: A: Betacutoff is not used in dmrcate function.
8.0 years ago Tim Peters ▴ 200
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0
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20k
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Answer: A: dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : repla
8.0 years ago Tim Peters ▴ 200
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