User: Aditya

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Aditya • 70
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70
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Germany
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19 hours ago
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4 years, 1 month ago
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Posts by Aditya

<prev • 18 results • page 1 of 2 • next >
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Comment: C: Biostrings regex matching
... Thank you Herve :-). ...
written 6 days ago by Aditya • 70
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Biostrings regex matching
... How to do Biostrings regex matching? chr1 <- BSgenome.Mmusculus.UCSC.mm10::Mmusculus$chr1 Biostrings::countPattern('AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA', chr1) [1] 363 Biostrings::countPattern('A{44}', chr1, fixed = FALSE) Error in .Call2("new_XString_from_ ...
biostrings written 12 days ago by Aditya • 70 • updated 6 days ago by Hervé Pagès ♦♦ 14k
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targetscan.Hs.eg.db: update to targetscan 7.1 (2016) ?
... Dear Gabor and James, thx for targetscan.Hs.eg.db.  The package contains Targetscan 6.2 (2012). Any plan to update to TargetScan 7.1 (2016)? ...
targetscan targetscan.hs.eg.db written 19 months ago by Aditya • 70
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performance of limma gene set analysis in relation to Tarca et al. (2013)
... Dear Gordon, First of all: thanks a lot for the limma package, it's absolutely great and I am very grateful to you for having created such a useful piece of software. What I wanted to ask you is this: I recently came across Adi Tarca's publication which compares the performance of different  gene ...
genesetenrichment limma written 3.3 years ago by Aditya • 70 • updated 3.3 years ago by Steve Lianoglou ♦ 12k
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Comment: C: Best way to convert uniprot accessions to entrez gene identifiers in R
... Thank you so much James! ...
written 3.8 years ago by Aditya • 70
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Comment: C: Best way to convert uniprot accessions to entrez gene identifiers in R
... Yep, my package has a dependency on the functionality we have been discussing here ...
written 3.8 years ago by Aditya • 70
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Comment: C: Best way to convert uniprot accessions to entrez gene identifiers in R
... Small additional question: should I use import org.Hs.eg.db importFrom AnnotationDbi select or importFrom org.Hs.eg.db org.Hs.eg.db importFrom AnnotationDbi select   ...
written 3.8 years ago by Aditya • 70
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Comment: C: Best way to convert uniprot accessions to entrez gene identifiers in R
... Thanks James! Love your 'cool kids' motivation to switch to the new interface :-). Will definitely do! ...
written 3.8 years ago by Aditya • 70
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Comment: C: Best way to convert uniprot accessions to entrez gene identifiers in R
... Just discovered revmap() ...
written 3.8 years ago by Aditya • 70
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Best way to convert uniprot accessions to entrez gene identifiers in R
... What is the best way to convert uniprot accessions to entrez gene identifiers? What is the best way to reverse the map org.Hs.eg.db::org.Hs.egUNIPROT ? Is there any better approach (a pity there is no 'org.Hs.uniprot.db' package)? ...
org.hs.eg.db uniprot accessions entrez gene identifiers written 3.8 years ago by Aditya • 70 • updated 3.8 years ago by James W. MacDonald ♦ 50k

Latest awards to Aditya

Popular Question 3.2 years ago, created a question with more than 1,000 views. For Best way to convert uniprot accessions to entrez gene identifiers in R
Scholar 3.9 years ago, created an answer that has been accepted. For A: DAVIDWebService$new(): Error: .jinit(...) == 0 is not TRUE
Scholar 4.1 years ago, created an answer that has been accepted. For A: DAVIDWebService$new(): Error: .jinit(...) == 0 is not TRUE
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