User: Aditya B.
Aditya B. • 40
- Reputation:
- 40
- Status:
- New User
- Location:
- Belgium
- Last seen:
- 2 months, 3 weeks ago
- Joined:
- 3 years, 7 months ago
- Email:
- b************@gmail.com
Posts by Aditya B.
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... Dear Gabor and James, thx for targetscan.Hs.eg.db.
The package contains Targetscan 6.2 (2012).
Any plan to update to TargetScan 7.1 (2016)?
...
written 13 months ago by
Aditya B. • 40
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... Dear Gordon,
First of all: thanks a lot for the limma package, it's absolutely great and I am very grateful to you for having created such a useful piece of software.
What I wanted to ask you is this: I recently came across Adi Tarca's publication which compares the performance of different gene ...
written 2.8 years ago by
Aditya B. • 40
• updated 2.8 years ago by
Steve Lianoglou ♦ 12k
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... Thank you so much James!
...
written 3.3 years ago by
Aditya B. • 40
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... Yep, my package has a dependency on the functionality we have been discussing here
...
written 3.3 years ago by
Aditya B. • 40
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... Small additional question: should I use
import org.Hs.eg.db
importFrom AnnotationDbi select
or
importFrom org.Hs.eg.db org.Hs.eg.db
importFrom AnnotationDbi select
...
written 3.3 years ago by
Aditya B. • 40
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... Thanks James! Love your 'cool kids' motivation to switch to the new interface :-). Will definitely do!
...
written 3.3 years ago by
Aditya B. • 40
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... Just discovered revmap()
...
written 3.3 years ago by
Aditya B. • 40
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... What is the best way to convert uniprot accessions to entrez gene identifiers?
What is the best way to reverse the map org.Hs.eg.db::org.Hs.egUNIPROT ?
Is there any better approach (a pity there is no 'org.Hs.uniprot.db' package)?
...
written 3.3 years ago by
Aditya B. • 40
• updated 3.3 years ago by
James W. MacDonald ♦ 48k
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... The issue has been fixed in the latest version of Architect.
...
written 3.4 years ago by
Aditya B. • 40
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Comment:
C: Error: hgu95av2PFAM is defunct
... Thanks Martin, I keep having the error after loading R in a fresh session. Traceback tells me:
> traceback()
3: stop(paste(msg, collapse = ""), call. = FALSE, domain = NA)
2: .Defunct(msg = msg)
1: (function ()
{
if (grepl("PFAM", x)) {
bimapName <- paste0(prefix, "PFAM ...
written 3.4 years ago by
Aditya B. • 40
Latest awards to Aditya B.
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For Best way to convert uniprot accessions to entrez gene identifiers in R
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3.4 years ago,
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For A: DAVIDWebService$new(): Error: .jinit(...) == 0 is not TRUE
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3.6 years ago,
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For A: DAVIDWebService$new(): Error: .jinit(...) == 0 is not TRUE
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