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Is transcript color accessible through ensembldb? (gold = in both HAVANA+ENSEMBL)
ensembldb
updated 5.3 years ago by ★ 2.1k • written 5.3 years ago by ▴ 160
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0
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1.4k
views
listSRAfile: Error in if (is.na(sra_acc$run[i])) { : argument is of length zero
SRAdb
5.5 years ago Aditya ▴ 160
2
votes
1
reply
878
views
Does "exclude" argument break BSgenome::vmatchPattern?
BSgenome
updated 5.9 years ago by 68k • written 5.9 years ago by ▴ 160
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0
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2.6k
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Comment: C: Annotating GRanges with TxDb gene models using plyranges
6.0 years ago Aditya ▴ 160
0
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1
reply
2.6k
views
Comment: C: Annotating GRanges with TxDb gene models using plyranges
6.0 years ago Aditya ▴ 160
0
votes
1
reply
2.6k
views
Comment: C: Annotating GRanges with TxDb gene models using plyranges
6.0 years ago Aditya ▴ 160
0
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0
replies
1.6k
views
Comment: C: Are AH52264, AH66175, and AH70594 duplicates?
6.0 years ago Aditya ▴ 160
0
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1
reply
1.6k
views
Comment: C: Are AH52264, AH66175, and AH70594 duplicates?
6.0 years ago Aditya ▴ 160
3
votes
4
replies
1.6k
views
Are AH52264, AH66175, and AH70594 duplicates?
AnnotationHub
updated 6.0 years ago by 4.2k • written 6.0 years ago by ▴ 160
1
vote
5
replies
2.6k
views
Annotating GRanges with TxDb gene models using plyranges
plyranges
6.0 years ago Aditya ▴ 160
0
votes
0
replies
4.0k
views
Comment: C: TxDb.Hsapiens.UCSC.hg38.ensGene doesn't exist
6.0 years ago Aditya ▴ 160
0
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1
reply
4.0k
views
Comment: C: TxDb.Hsapiens.UCSC.hg38.ensGene doesn't exist
6.0 years ago Aditya ▴ 160
0
votes
0
replies
4.0k
views
Comment: C: TxDb.Hsapiens.UCSC.hg38.ensGene doesn't exist
6.0 years ago Aditya ▴ 160
0
votes
1
reply
4.0k
views
Comment: C: TxDb.Hsapiens.UCSC.hg38.ensGene doesn't exist
6.0 years ago Aditya ▴ 160
0
votes
1
reply
4.0k
views
Comment: C: TxDb.Hsapiens.UCSC.hg38.ensGene doesn't exist
6.0 years ago Aditya ▴ 160
0
votes
0
replies
4.0k
views
Comment: C: TxDb.Hsapiens.UCSC.hg38.ensGene doesn't exist
6.0 years ago Aditya ▴ 160
2
votes
10
replies
4.0k
views
TxDb.Hsapiens.UCSC.hg38.ensGene doesn't exist
TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene
updated 6.0 years ago by 68k • written 6.0 years ago by ▴ 160
0
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0
replies
3.5k
views
Comment: C: Subsetting a GenomicRanges::GRanges with "%in%" fails
6.1 years ago Aditya ▴ 160
0
votes
0
replies
1.4k
views
Answer: A: getBSgenome{Bsgenome}: avoid attaching BiocGenerics (and others)
6.2 years ago • updated 6.1 years ago Aditya ▴ 160
0
votes
0
replies
1.9k
views
Answer: A: Defining BSgenome -> GRanges S4 coercer without package attaching
6.1 years ago Aditya ▴ 160
0
votes
0
replies
1.9k
views
Comment: C: What is the use of a masked BSgenome?
6.1 years ago Aditya ▴ 160
0
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1
reply
3.5k
views
Comment: C: Subsetting a GenomicRanges::GRanges with "%in%" fails
6.1 years ago Aditya ▴ 160
0
votes
0
replies
3.5k
views
Comment: C: Subsetting a GenomicRanges::GRanges with "%in%" fails
6.1 years ago Aditya ▴ 160
0
votes
1
reply
3.5k
views
Comment: C: Subsetting a GenomicRanges::GRanges with "%in%" fails
6.1 years ago Aditya ▴ 160
0
votes
1
reply
3.5k
views
Comment: C: Subsetting a GenomicRanges::GRanges with "%in%" fails
6.1 years ago Aditya ▴ 160
0
votes
3
replies
1.9k
views
Defining BSgenome -> GRanges S4 coercer without package attaching
BSgenome methods GenomicRanges
6.2 years ago • updated 6.1 years ago Aditya ▴ 160
0
votes
0
replies
1.2k
views
Answer: A: How do the three Vector -> data.frame coercers in S4Vectors relate to each other
6.1 years ago Aditya ▴ 160
0
votes
1
reply
1.2k
views
Why does S4Vectors define three functions for Vector -> data.frame coercion
S4Vectors methods
6.1 years ago Aditya ▴ 160
2
votes
3
replies
1.9k
views
What is the use of a masked BSgenome?
BSgenome BSgenome.Mmusculus.UCSC.mm10::Mmusculus Biostrings
updated 6.2 years ago by 4.2k • written 6.2 years ago by ▴ 160
0
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0
replies
1.9k
views
Comment: C: Import BSgenome class without attaching BiocGenerics (and others)
6.2 years ago Aditya ▴ 160
0
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0
replies
1.5k
views
Comment: C: Is it useful to define and export a setAs('BSgenome', 'GRanges')
6.2 years ago Aditya ▴ 160
0
votes
1
reply
3.5k
views
Comment: C: Subsetting a GenomicRanges::GRanges with "%in%" fails
6.2 years ago Aditya ▴ 160
1
vote
2
replies
1.5k
views
Is it useful to define and export a setAs('BSgenome', 'GRanges')
BSgenome GenomicRanges
updated 6.2 years ago by ★ 11k • written 6.2 years ago by ▴ 160
5
votes
14
replies
3.5k
views
Subsetting a GenomicRanges::GRanges with "%in%" fails
genomicranges
6.2 years ago Aditya ▴ 160
0
votes
0
replies
4.1k
views
Comment: C: How to add a color legend to plotKaryotype and kpPlotRegions ?
6.2 years ago Aditya ▴ 160
0
votes
1
reply
3.5k
views
Comment: C: Subsetting a GenomicRanges::GRanges with "%in%" fails
6.2 years ago Aditya ▴ 160
0
votes
0
replies
2.9k
views
Comment: C: How to arrange multiple Gviz plots into a multipanelfigure?
6.2 years ago Aditya ▴ 160
3
votes
2
replies
2.9k
views
How to arrange multiple Gviz plots into a multipanelfigure?
Gviz
updated 6.2 years ago by ▴ 750 • written 6.2 years ago by ▴ 160
0
votes
2
replies
4.1k
views
Comment: C: How to add a color legend to plotKaryotype and kpPlotRegions ?
6.2 years ago Aditya ▴ 160
4
votes
5
replies
4.1k
views
How to add a color legend to plotKaryotype and kpPlotRegions ?
karyoploter
updated 6.2 years ago by ▴ 150 • written 6.2 years ago by ▴ 160
0
votes
2
replies
3.5k
views
Comment: C: How to subset a BSgenome
6.2 years ago Aditya ▴ 160
0
votes
0
replies
1.3k
views
Comment: C: Is range validity checked after GRanges operations?
6.2 years ago Aditya ▴ 160
3
votes
3
replies
1.3k
views
Is range validity checked after GRanges operations?
GenomicRanges
6.2 years ago Aditya ▴ 160
2
votes
1
reply
1.3k
views
Answer: A: Is range validity checked during range operations on GenomicRanges::GRanges?
6.2 years ago Aditya ▴ 160
0
votes
2
replies
1.4k
views
getBSgenome{Bsgenome}: avoid attaching BiocGenerics (and others)
BSgenome Bsgenome.Mmusculus.UCSC.mm10
6.2 years ago Aditya ▴ 160
0
votes
0
replies
2.1k
views
Comment: C: seqlengths is not an exported object from namespace GenomicRanges
6.2 years ago Aditya ▴ 160
0
votes
0
replies
2.1k
views
Comment: C: seqlengths is not an exported object from namespace GenomicRanges
6.2 years ago Aditya ▴ 160
7
votes
4
replies
2.1k
views
seqlengths is not an exported object from namespace GenomicRanges
GenomicRanges
updated 6.2 years ago by ★ 11k • written 6.2 years ago by ▴ 160
0
votes
0
replies
2.0k
views
Comment: C: Is mm10.p6 available as BSgenome?
6.2 years ago Aditya ▴ 160
0
votes
0
replies
2.0k
views
Comment: C: Is mm10.p6 available as BSgenome?
6.2 years ago Aditya ▴ 160
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