User: raf4

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raf40
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Posts by raf4

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Rsubread crash on Mac during alignment
... Dear Bioconductor Forum, Rsubread crashed on my 32Gb Mac on a particular pair of fastq files. It worked fine on the previous file in the dataset and also other times I had used it. The CPU was at 100% and the memory was at 24.3% all the way through the run. The script was library(Rsubread) align( ...
rsubread software error written 7 weeks ago by raf40 • updated 10 days ago by Wei Shi2.6k
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Normalization and batch effect adjustment of fluidgm pcr data to be analyzed with Limma
... Dear all, Does fluidgm qt-pcr data which has normalized against a reference gene (eg GAPDH) on each plate have to be normalized further within and between plates. If so, How does one know which method to use (quantile, cyclic loess) etc. The data is to be analyzed with Limma. Thanks and best wis ...
normalization limma fluidigm pcr written 11 weeks ago by raf40 • updated 11 weeks ago by Gordon Smyth30k
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Error message in Rsubread detectionCall command
... Dear Bioconductor users and (I hope) Rsubread developers, I have the following error message using the detectionCall command on Rsubread run on a Mac:   ################################################################ R version 3.2.3 (2015-12-10) -- "Wooden Christmas-Tree" Copyright (C) 2015 The ...
rsubread written 13 months ago by raf40

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