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0
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618
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Comment: Comment: select with org.Mm.eg.db does not give ENSEMBL ids
15 months ago raf4 ▴ 20
1
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2
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618
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select with org.Mm.eg.db does not give ENSEMBL ids
org.Mm.eg.db
15 months ago raf4 ▴ 20
0
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0
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629
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Comment: Comment: should smooth quantile normalization be used with limma-voom?
21 months ago raf4 ▴ 20
1
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2
replies
629
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should smooth quantile normalization be used with limma-voom?
limma-voom smooth-quantile-normalization quantro
21 months ago raf4 ▴ 20
0
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1
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2.1k
views
How to remove duplicate files per case in TCGAbiolonks
TCGAbiolinks
2.5 years ago raf4 ▴ 20
0
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0
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2.1k
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Answer: Answer: How to remove duplicate files per case in TCGAbiolonks
2.5 years ago raf4 ▴ 20
0
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0
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1.0k
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Comment: Comment: Difficulty dowloading hg38 cnv data in tcgabiolinks
2.5 years ago raf4 ▴ 20
1
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2
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1.0k
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Difficulty dowloading hg38 cnv data in tcgabiolinks
TCGAbiolinks cnv
2.5 years ago raf4 ▴ 20
4
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14
replies
1.5k
views
Application of quantro to RNASeq: I do not get the same results as are in the quantro paper supplement
quantro RNASeq
updated 3.9 years ago by ▴ 80 • written 4.0 years ago by ▴ 20
0
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1
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1.6k
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Application of RUV to a small Nanostring dataset
RUV Nanostring RUV-III
updated 4.0 years ago by ▴ 20 • written 4.7 years ago by ▴ 20
0
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0
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2.6k
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Comment: C: error message with BiocManager::install on Mac console that's not on mac command
4.8 years ago raf4 ▴ 20
0
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1
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2.6k
views
Comment: C: error message with BiocManager::install on Mac console that's not on mac command
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 20
0
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1
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2.6k
views
Comment: C: error message with BiocManager::install on Mac console that's not on mac command
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 20
0
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1
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2.6k
views
Comment: C: error message with BiocManager::install on Mac console that's not on mac command
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 20
0
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1
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2.6k
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Comment: C: error message with BiocManager::install on Mac console that's not on mac command
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 20
0
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1
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2.6k
views
Comment: C: error message with BiocManager::install on Mac console that's not on mac command
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 20
0
votes
13
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2.6k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 20
0
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0
replies
2.6k
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Comment: C: error message with BiocManager::install on Mac console that's not on mac command
4.8 years ago raf4 ▴ 20
0
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0
replies
2.7k
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Comment: C: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
5.2 years ago raf4 ▴ 20
0
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1
reply
2.7k
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Comment: C: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
5.2 years ago raf4 ▴ 20
6
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8
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2.7k
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Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
RNASeq-quantification edgeR TPM
updated 5.2 years ago by 50k • written 5.2 years ago by ▴ 20
0
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2
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2.7k
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Comment: C: Use of pseudoalignment estimated counmts as input to edgeR and Limma-Voom
5.2 years ago raf4 ▴ 20
0
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0
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39k
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Comment: C: Differential expression analysis starting from TPM data
5.2 years ago raf4 ▴ 20
0
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0
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39k
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Comment: C: Differential expression analysis starting from TPM data
5.2 years ago raf4 ▴ 20
0
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0
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39k
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Comment: C: Differential expression analysis starting from TPM data
5.2 years ago raf4 ▴ 20
0
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1
reply
39k
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Comment: C: Differential expression analysis starting from TPM data
5.2 years ago raf4 ▴ 20
1
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5
replies
1.1k
views
Error message with Voom with blocked design matrix
voom blocked design limma
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 20
0
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1
reply
1.1k
views
Comment: A: Error message with Voom with blocked design matrix
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 20
0
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0
replies
1.1k
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Comment: C: Error message with Voom with blocked design matrix
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 20
2
votes
1
reply
873
views
Minimum in Voomplot
limma voom
updated 6.2 years ago by ★ 7.9k • written 6.2 years ago by ▴ 20
2
votes
2
replies
939
views
should subgroups of comparisons be analyzed separately in Limma
limma design matrix
updated 6.4 years ago by ▴ 680 • written 6.4 years ago by ▴ 20
0
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0
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1.2k
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Answer: A: discrepancy between genes corresponding to gene ontology terms in org.Mm.eg.db a
6.5 years ago raf4 ▴ 20
0
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4
replies
1.2k
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discrepancy between genes corresponding to gene ontology terms in org.Mm.eg.db and in AMIGO
gene ontology
6.6 years ago • updated 6.5 years ago raf4 ▴ 20
0
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1
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1.2k
views
Comment: C: discrepancy between genes corresponding to gene ontology terms in org.Mm.eg.db a
6.5 years ago raf4 ▴ 20
1
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1
reply
2.0k
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Comment: C: Subject: Strange glitch in Voom curve resulting from batch effects
6.9 years ago raf4 ▴ 20
0
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0
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3.9k
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Comment: C: Problem running featurecounts in Rsubread on GFF file
6.9 years ago raf4 ▴ 20
0
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1
reply
1.5k
views
Comment: C: problem running featurecounts using hg38 in-built annotation
6.9 years ago raf4 ▴ 20
0
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2
replies
1.5k
views
problem running featurecounts using hg38 in-built annotation
featurecounts hg38
6.9 years ago raf4 ▴ 20
0
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1
reply
3.9k
views
Comment: C: Problem running featurecounts in Rsubread on GFF file
6.9 years ago raf4 ▴ 20
0
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2
replies
3.9k
views
Problem running featurecounts in Rsubread on GFF file
rsubread featurecounts gff Grch38.p7 vs hg38
6.9 years ago raf4 ▴ 20
0
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1
reply
1.6k
views
Answer: A: Rsubread crash on Mac during alignment
6.9 years ago raf4 ▴ 20
0
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5
replies
1.6k
views
Rsubread crash on Mac during alignment
software error rsubread
7.2 years ago • updated 6.9 years ago raf4 ▴ 20
1
vote
1
reply
2.0k
views
Comment: C: Subject: Strange glitch in Voom curve resulting from batch effects
7.0 years ago raf4 ▴ 20
4
votes
10
replies
2.0k
views
Subject: Strange glitch in Voom curve resulting from batch effects
limma voom batcheffect covariate
updated 7.0 years ago by 50k • written 7.0 years ago by ▴ 20
0
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1
reply
2.0k
views
Comment: C: Subject: Strange glitch in Voom curve resulting from batch effects
updated 7.0 years ago by 50k • written 7.0 years ago by ▴ 20
0
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0
replies
2.0k
views
Comment: A: Subject: Strange glitch in Voom curve resulting from batch effects
updated 7.0 years ago by 50k • written 7.0 years ago by ▴ 20
0
votes
1
reply
2.0k
views
Comment: C: Subject: Strange glitch in Voom curve resulting from batch effects
7.0 years ago raf4 ▴ 20
0
votes
1
reply
1.0k
views
Normalization and batch effect adjustment of fluidgm pcr data to be analyzed with Limma
fluidigm normalization limma pcr
updated 7.3 years ago by 50k • written 7.3 years ago by ▴ 20
0
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0
replies
1.1k
views
Error message in Rsubread detectionCall command
Rsubread
8.2 years ago raf4 ▴ 20
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