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Comment: Comment: select with org.Mm.eg.db does not give ENSEMBL ids
2.2 years ago raf4 ▴ 30
1
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2
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1.1k
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select with org.Mm.eg.db does not give ENSEMBL ids
org.Mm.eg.db
2.2 years ago raf4 ▴ 30
0
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0
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963
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Comment: Comment: should smooth quantile normalization be used with limma-voom?
2.8 years ago raf4 ▴ 30
2
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2
replies
963
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should smooth quantile normalization be used with limma-voom?
limma-voom smooth-quantile-normalization quantro
2.8 years ago raf4 ▴ 30
0
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1
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2.8k
views
How to remove duplicate files per case in TCGAbiolonks
TCGAbiolinks
3.4 years ago raf4 ▴ 30
0
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0
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2.8k
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Answer: Answer: How to remove duplicate files per case in TCGAbiolonks
3.4 years ago raf4 ▴ 30
0
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0
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1.6k
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Comment: Comment: Difficulty dowloading hg38 cnv data in tcgabiolinks
3.4 years ago raf4 ▴ 30
1
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2
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1.6k
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Difficulty dowloading hg38 cnv data in tcgabiolinks
TCGAbiolinks cnv
3.5 years ago • updated 3.4 years ago raf4 ▴ 30
4
votes
14
replies
2.0k
views
Application of quantro to RNASeq: I do not get the same results as are in the quantro paper supplement
quantro RNASeq
updated 4.9 years ago by ▴ 80 • written 4.9 years ago by ▴ 30
0
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1
reply
2.1k
views
Application of RUV to a small Nanostring dataset
RUV Nanostring RUV-III
updated 5.0 years ago by ▴ 20 • written 5.7 years ago by ▴ 30
0
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0
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3.3k
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Comment: C: error message with BiocManager::install on Mac console that's not on mac command
5.8 years ago raf4 ▴ 30
0
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1
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3.3k
views
Comment: C: error message with BiocManager::install on Mac console that's not on mac command
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 30
0
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1
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3.3k
views
Comment: C: error message with BiocManager::install on Mac console that's not on mac command
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 30
0
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1
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3.3k
views
Comment: C: error message with BiocManager::install on Mac console that's not on mac command
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 30
0
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1
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3.3k
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Comment: C: error message with BiocManager::install on Mac console that's not on mac command
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 30
0
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1
reply
3.3k
views
Comment: C: error message with BiocManager::install on Mac console that's not on mac command
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 30
0
votes
13
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3.3k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 30
0
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0
replies
3.3k
views
Comment: C: error message with BiocManager::install on Mac console that's not on mac command
5.8 years ago raf4 ▴ 30
0
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0
replies
3.5k
views
Comment: C: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
6.2 years ago raf4 ▴ 30
0
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1
reply
3.5k
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Comment: C: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
6.2 years ago raf4 ▴ 30
6
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8
replies
3.5k
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Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
RNASeq-quantification edgeR TPM
updated 6.2 years ago by 52k • written 6.2 years ago by ▴ 30
0
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2
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3.5k
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Comment: C: Use of pseudoalignment estimated counmts as input to edgeR and Limma-Voom
6.2 years ago raf4 ▴ 30
0
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0
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46k
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Comment: C: Differential expression analysis starting from TPM data
6.2 years ago raf4 ▴ 30
0
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0
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46k
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Comment: C: Differential expression analysis starting from TPM data
6.2 years ago raf4 ▴ 30
0
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0
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46k
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Comment: C: Differential expression analysis starting from TPM data
6.2 years ago raf4 ▴ 30
0
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1
reply
46k
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Comment: C: Differential expression analysis starting from TPM data
6.2 years ago raf4 ▴ 30
1
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5
replies
1.5k
views
Error message with Voom with blocked design matrix
voom blocked design limma
updated 6.9 years ago by 52k • written 6.9 years ago by ▴ 30
0
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1
reply
1.5k
views
Comment: A: Error message with Voom with blocked design matrix
updated 6.9 years ago by 52k • written 6.9 years ago by ▴ 30
0
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0
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1.5k
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Comment: C: Error message with Voom with blocked design matrix
updated 6.9 years ago by 52k • written 6.9 years ago by ▴ 30
2
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1
reply
1.0k
views
Minimum in Voomplot
limma voom
updated 7.2 years ago by ★ 7.9k • written 7.2 years ago by ▴ 30
2
votes
2
replies
1.2k
views
should subgroups of comparisons be analyzed separately in Limma
limma design matrix
updated 7.4 years ago by ▴ 690 • written 7.4 years ago by ▴ 30
0
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0
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1.5k
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Answer: A: discrepancy between genes corresponding to gene ontology terms in org.Mm.eg.db a
7.5 years ago raf4 ▴ 30
0
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4
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1.5k
views
discrepancy between genes corresponding to gene ontology terms in org.Mm.eg.db and in AMIGO
gene ontology
7.5 years ago raf4 ▴ 30
0
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1
reply
1.5k
views
Comment: C: discrepancy between genes corresponding to gene ontology terms in org.Mm.eg.db a
7.5 years ago raf4 ▴ 30
1
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1
reply
2.5k
views
Comment: C: Subject: Strange glitch in Voom curve resulting from batch effects
7.8 years ago raf4 ▴ 30
0
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0
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4.4k
views
Comment: C: Problem running featurecounts in Rsubread on GFF file
7.9 years ago raf4 ▴ 30
0
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1
reply
1.8k
views
Comment: C: problem running featurecounts using hg38 in-built annotation
7.9 years ago raf4 ▴ 30
0
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2
replies
1.8k
views
problem running featurecounts using hg38 in-built annotation
featurecounts hg38
7.9 years ago raf4 ▴ 30
0
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1
reply
4.4k
views
Comment: C: Problem running featurecounts in Rsubread on GFF file
7.9 years ago raf4 ▴ 30
0
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2
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4.4k
views
Problem running featurecounts in Rsubread on GFF file
rsubread featurecounts gff Grch38.p7 vs hg38
7.9 years ago raf4 ▴ 30
0
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1
reply
1.9k
views
Answer: A: Rsubread crash on Mac during alignment
7.9 years ago raf4 ▴ 30
0
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5
replies
1.9k
views
Rsubread crash on Mac during alignment
software error rsubread
8.2 years ago • updated 7.9 years ago raf4 ▴ 30
1
vote
1
reply
2.5k
views
Comment: C: Subject: Strange glitch in Voom curve resulting from batch effects
7.9 years ago raf4 ▴ 30
4
votes
10
replies
2.5k
views
Subject: Strange glitch in Voom curve resulting from batch effects
limma voom batcheffect covariate
updated 7.9 years ago by 52k • written 7.9 years ago by ▴ 30
0
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1
reply
2.5k
views
Comment: C: Subject: Strange glitch in Voom curve resulting from batch effects
updated 7.9 years ago by 52k • written 7.9 years ago by ▴ 30
0
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0
replies
2.5k
views
Comment: A: Subject: Strange glitch in Voom curve resulting from batch effects
updated 7.9 years ago by 52k • written 7.9 years ago by ▴ 30
0
votes
1
reply
2.5k
views
Comment: C: Subject: Strange glitch in Voom curve resulting from batch effects
7.9 years ago raf4 ▴ 30
0
votes
1
reply
1.2k
views
Normalization and batch effect adjustment of fluidgm pcr data to be analyzed with Limma
fluidigm normalization limma pcr
updated 8.3 years ago by 52k • written 8.3 years ago by ▴ 30
0
votes
0
replies
1.2k
views
Error message in Rsubread detectionCall command
Rsubread
9.2 years ago raf4 ▴ 30
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