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Answer: A: Is mean adjusted for purity?
7.8 years ago markus.riester ▴ 130
0
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2.9k
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Comment: C: Unable to find solution: low coverage
7.8 years ago markus.riester ▴ 130
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2.9k
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Comment: C: Unable to find solution: low coverage
7.8 years ago markus.riester ▴ 130
0
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0
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1.4k
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Answer: A: Is C adjusted for purity?
7.8 years ago markus.riester ▴ 130
0
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1
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2.9k
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Comment: C: Unable to find solution: low coverage
7.8 years ago markus.riester ▴ 130
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1.3k
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Comment: C: PureCN removemapq0 parameter
7.8 years ago markus.riester ▴ 130
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1
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1.3k
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Answer: A: PureCN removemapq0 parameter
7.8 years ago markus.riester ▴ 130
0
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1
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1.9k
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Comment: C: Does Greater Depth Allow Low Purity To Work Well?
7.8 years ago markus.riester ▴ 130
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1.9k
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Comment: C: Does Greater Depth Allow Low Purity To Work Well?
7.8 years ago markus.riester ▴ 130
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1
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2.1k
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Comment: C: Private Germline Count is mostly 0
7.8 years ago markus.riester ▴ 130
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3
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2.1k
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Answer: C: Private Germline Count is mostly 0
7.8 years ago markus.riester ▴ 130
0
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1
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2.1k
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Answer: A: PureCN use of VCF QUAL column for filtering when column is dot
7.8 years ago markus.riester ▴ 130
0
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1
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1.9k
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Comment: C: PureCN.R _variants.csv file prior.somatic and somatic variant count
7.8 years ago markus.riester ▴ 130
0
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1
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1.9k
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Answer: A: PureCN.R _variants.csv file prior.somatic and somatic variant count
7.8 years ago markus.riester ▴ 130
0
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1
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1.5k
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Answer: A: Dx.R somatic_ontarget column
7.8 years ago markus.riester ▴ 130
0
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0
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1.4k
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Answer: A: coverage QC file mean duplication and "mom" columns
7.8 years ago markus.riester ▴ 130
1
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1.4k
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Comment: C: PureCN Release Notes
7.8 years ago markus.riester ▴ 130
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2.4k
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Answer: A: VCF file non-SNP germline mutations
7.8 years ago markus.riester ▴ 130
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1.5k
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Comment: C: PureCN warning: test.num.copy outside recommended range
7.8 years ago markus.riester ▴ 130
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1.5k
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Answer: A: PureCN warning: test.num.copy outside recommended range
7.8 years ago markus.riester ▴ 130
0
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2.0k
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Comment: C: PureCN error: zero-length 'labels' specified
7.8 years ago markus.riester ▴ 130
0
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0
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2.0k
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Comment: C: PureCN error: zero-length 'labels' specified
7.8 years ago markus.riester ▴ 130
0
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1
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2.0k
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Answer: A: PureCN error: zero-length 'labels' specified
7.8 years ago markus.riester ▴ 130
0
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0
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1.2k
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Answer: A: PureCN Panel of Normals contents
7.8 years ago markus.riester ▴ 130
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0
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1.5k
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Comment: C: No CNAs or SNVs in results
7.9 years ago markus.riester ▴ 130
2
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1
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2.3k
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Answer: A: Something wrong with my Bioconductor installation? ggtree cannot read any tree
7.9 years ago markus.riester ▴ 130
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0
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2.6k
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Comment: C: Understanding PureCN and its germline SNPs
7.9 years ago markus.riester ▴ 130
3
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1
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2.6k
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Answer: A: Understanding PureCN and its germline SNPs
7.9 years ago markus.riester ▴ 130
1
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0
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1.6k
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Answer: A: PureCN support for indels
7.9 years ago markus.riester ▴ 130
0
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1
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3.1k
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Answer: A: Standardizing gene symbols
updated 8.3 years ago by 53k • written 8.3 years ago by ▴ 130
0
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0
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2.2k
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Comment: C: errors in version 1.7.53
8.4 years ago markus.riester ▴ 130
0
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1
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2.2k
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Comment: C: errors in version 1.7.53
8.4 years ago markus.riester ▴ 130
0
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1
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2.2k
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Comment: C: errors in version 1.7.53
8.4 years ago markus.riester ▴ 130
0
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1
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2.2k
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Comment: C: errors in version 1.7.53
8.4 years ago markus.riester ▴ 130
0
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1
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2.2k
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Answer: A: errors in version 1.7.53
8.4 years ago markus.riester ▴ 130
0
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0
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1.5k
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Answer: A: errors in Purecn callLOH
8.4 years ago markus.riester ▴ 130
0
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0
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2.1k
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Comment: C: wrong output of DNAcopy::segment() for chr. with empty copy number data
8.5 years ago markus.riester ▴ 130
0
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0
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2.1k
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Answer: A: wrong output of DNAcopy::segment() for chr. with empty copy number data
8.5 years ago markus.riester ▴ 130
0
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0
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2.5k
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Comment: C: Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
8.7 years ago markus.riester ▴ 130
0
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1
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2.5k
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Answer: A: Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
8.7 years ago markus.riester ▴ 130
1
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0
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1.8k
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Comment: C: PureCN can classify indel variants as germline vs. somatic ?
8.7 years ago markus.riester ▴ 130
1
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1
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1.8k
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Answer: A: PureCN can classify indel variants as germline vs. somatic ?
8.7 years ago markus.riester ▴ 130
0
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0
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1.5k
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Answer: A: how to make sure PureCN gets somatic status from VCF?
9.2 years ago markus.riester ▴ 130
0
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0
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1.5k
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Answer: A: Classification with large number of qualitative variables
9.3 years ago markus.riester ▴ 130
0
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0
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4.3k
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Comment: C: Annotate VCFs with Cosmic (ExAC etc.) fields
9.3 years ago markus.riester ▴ 130
3
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9
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4.3k
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Annotate VCFs with Cosmic (ExAC etc.) fields
variantannotation cosmic exac
updated 9.3 years ago by 25k • written 9.3 years ago by ▴ 130
0
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4.3k
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Comment: C: Annotate VCFs with Cosmic (ExAC etc.) fields
9.3 years ago markus.riester ▴ 130
0
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0
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4.3k
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Comment: C: Annotate VCFs with Cosmic (ExAC etc.) fields
9.3 years ago markus.riester ▴ 130
0
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2
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4.3k
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Comment: C: Annotate VCFs with Cosmic (ExAC etc.) fields
9.3 years ago markus.riester ▴ 130
0
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0
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2.2k
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Comment: C: Error in running development version of PureCN
9.4 years ago markus.riester ▴ 130
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