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Answer: A: Is mean adjusted for purity?
5.9 years ago markus.riester ▴ 130
0
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1
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1.7k
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Comment: C: Unable to find solution: low coverage
6.0 years ago markus.riester ▴ 130
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1.7k
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Comment: C: Unable to find solution: low coverage
6.0 years ago markus.riester ▴ 130
0
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0
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971
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Answer: A: Is C adjusted for purity?
6.0 years ago markus.riester ▴ 130
0
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1
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1.7k
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Comment: C: Unable to find solution: low coverage
6.0 years ago markus.riester ▴ 130
0
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0
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875
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Comment: C: PureCN removemapq0 parameter
6.0 years ago markus.riester ▴ 130
0
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1
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875
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Answer: A: PureCN removemapq0 parameter
6.0 years ago markus.riester ▴ 130
0
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1
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1.2k
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Comment: C: Does Greater Depth Allow Low Purity To Work Well?
6.0 years ago markus.riester ▴ 130
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1
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1.2k
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Comment: C: Does Greater Depth Allow Low Purity To Work Well?
6.0 years ago markus.riester ▴ 130
0
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1
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1.3k
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Comment: C: Private Germline Count is mostly 0
6.0 years ago markus.riester ▴ 130
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3
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1.3k
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Answer: C: Private Germline Count is mostly 0
6.0 years ago markus.riester ▴ 130
0
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1
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1.3k
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Answer: A: PureCN use of VCF QUAL column for filtering when column is dot
6.0 years ago markus.riester ▴ 130
0
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1
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1.2k
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Comment: C: PureCN.R _variants.csv file prior.somatic and somatic variant count
6.0 years ago markus.riester ▴ 130
0
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1
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1.2k
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Answer: A: PureCN.R _variants.csv file prior.somatic and somatic variant count
6.0 years ago markus.riester ▴ 130
0
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1
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919
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Answer: A: Dx.R somatic_ontarget column
6.0 years ago markus.riester ▴ 130
0
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0
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990
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Answer: A: coverage QC file mean duplication and "mom" columns
6.0 years ago markus.riester ▴ 130
1
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0
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951
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Comment: C: PureCN Release Notes
6.0 years ago markus.riester ▴ 130
0
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0
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1.8k
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Answer: A: VCF file non-SNP germline mutations
6.0 years ago markus.riester ▴ 130
0
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0
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980
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Comment: C: PureCN warning: test.num.copy outside recommended range
6.0 years ago markus.riester ▴ 130
0
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1
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980
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Answer: A: PureCN warning: test.num.copy outside recommended range
6.0 years ago markus.riester ▴ 130
0
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0
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1.3k
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Comment: C: PureCN error: zero-length 'labels' specified
6.0 years ago markus.riester ▴ 130
0
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0
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1.3k
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Comment: C: PureCN error: zero-length 'labels' specified
6.0 years ago markus.riester ▴ 130
0
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1
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1.3k
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Answer: A: PureCN error: zero-length 'labels' specified
6.0 years ago markus.riester ▴ 130
0
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0
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792
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Answer: A: PureCN Panel of Normals contents
6.0 years ago markus.riester ▴ 130
0
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0
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983
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Comment: C: No CNAs or SNVs in results
6.0 years ago markus.riester ▴ 130
2
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1
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1.5k
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Answer: A: Something wrong with my Bioconductor installation? ggtree cannot read any tree
6.0 years ago markus.riester ▴ 130
0
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0
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1.6k
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Comment: C: Understanding PureCN and its germline SNPs
6.1 years ago markus.riester ▴ 130
3
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1
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1.6k
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Answer: A: Understanding PureCN and its germline SNPs
6.1 years ago markus.riester ▴ 130
1
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0
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951
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Answer: A: PureCN support for indels
6.1 years ago markus.riester ▴ 130
0
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1
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1.9k
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Answer: A: Standardizing gene symbols
updated 6.5 years ago by 50k • written 6.5 years ago by ▴ 130
0
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0
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1.4k
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Comment: C: errors in version 1.7.53
6.6 years ago markus.riester ▴ 130
0
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1
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1.4k
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Comment: C: errors in version 1.7.53
6.6 years ago markus.riester ▴ 130
0
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1
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1.4k
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Comment: C: errors in version 1.7.53
6.6 years ago markus.riester ▴ 130
0
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1
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1.4k
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Comment: C: errors in version 1.7.53
6.6 years ago markus.riester ▴ 130
0
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1
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1.4k
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Answer: A: errors in version 1.7.53
6.6 years ago markus.riester ▴ 130
0
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0
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1.1k
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Answer: A: errors in Purecn callLOH
6.6 years ago markus.riester ▴ 130
0
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0
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1.4k
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Comment: C: wrong output of DNAcopy::segment() for chr. with empty copy number data
6.7 years ago markus.riester ▴ 130
0
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0
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1.4k
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Answer: A: wrong output of DNAcopy::segment() for chr. with empty copy number data
6.7 years ago markus.riester ▴ 130
0
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0
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1.5k
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Comment: C: Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
6.8 years ago markus.riester ▴ 130
0
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1
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1.5k
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Answer: A: Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
6.8 years ago markus.riester ▴ 130
1
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0
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1.2k
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Comment: C: PureCN can classify indel variants as germline vs. somatic ?
6.9 years ago markus.riester ▴ 130
1
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1
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1.2k
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Answer: A: PureCN can classify indel variants as germline vs. somatic ?
6.9 years ago markus.riester ▴ 130
0
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0
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963
views
Answer: A: how to make sure PureCN gets somatic status from VCF?
7.4 years ago markus.riester ▴ 130
0
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0
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1.1k
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Answer: A: Classification with large number of qualitative variables
7.4 years ago markus.riester ▴ 130
0
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0
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3.1k
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Comment: C: Annotate VCFs with Cosmic (ExAC etc.) fields
7.5 years ago markus.riester ▴ 130
3
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9
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3.1k
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Annotate VCFs with Cosmic (ExAC etc.) fields
variantannotation cosmic exac
updated 7.5 years ago by 25k • written 7.5 years ago by ▴ 130
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3.1k
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Comment: C: Annotate VCFs with Cosmic (ExAC etc.) fields
7.5 years ago markus.riester ▴ 130
0
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0
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3.1k
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Comment: C: Annotate VCFs with Cosmic (ExAC etc.) fields
7.5 years ago markus.riester ▴ 130
0
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2
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3.1k
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Comment: C: Annotate VCFs with Cosmic (ExAC etc.) fields
7.5 years ago markus.riester ▴ 130
0
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0
replies
1.5k
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Comment: C: Error in running development version of PureCN
7.6 years ago markus.riester ▴ 130
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