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1
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96
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Why does GSEA on edgeR results for randomized samples give highly significant p-values?
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NEED FOR NESSASORY HELP
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Once again a "Model matrix not full rank"
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1 day ago • updated 10 hours ago Ian D. ▴ 70
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Job: Postdoctoral Position in Bioinformatics - Mainz, Germany
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written 15 hours ago by • 0
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updated 14 hours ago by ★ 4.1k • written 1 day ago by • 0
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2 days ago • updated 1 day ago Yveto • 0
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1 day ago Chris • 0
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98
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12 days ago • updated 1 day ago Chris • 0
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9 weeks ago • updated 1 day ago JKim • 0
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microbiome
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294
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7 days ago • updated 6 days ago pl23 • 0
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updated 6 days ago by 41k • written 7 days ago by • 0
1
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15 days ago • updated 6 days ago ussarizona ▴ 10
1
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3
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updated 6 days ago by 41k • written 7 days ago by • 0
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114
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DiffBind
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4
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Opposite sign of LFC in count plots of DEGs (DESeq2)
DESeq2
8 days ago • updated 6 days ago winwater0928 • 0
45,611 results • Page 1 of 913
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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