Bioconductor ChIP-seq

Showing : ChIP-seq • reset

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1.7k

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DiffBind SpikeIn Normalization ChIP-seq csaw

17 months ago • updated 16 months ago spg • 0

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1.3k

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HOMER chip-seq

updated 18 months ago by ATpoint ★ 4.1k • written 18 months ago by 兆豪 • 0

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969

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ChIPQC ChIP-seq DiffBind Rory_Stark

22 months ago • updated 21 months ago etiennedanis • 0

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1.7k

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ChIP-seq

updated 13 months ago by archibaldmarston • 0 • written 24 months ago by Bogdan ▴ 670

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758

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ChIP-seq

updated 2.2 years ago by Guillaume Devailly ▴ 60 • written 2.2 years ago by Bogdan ▴ 670

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947

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DiffBind chip-seq differentially-binding-site

updated 3.6 years ago by Rory Stark ★ 5.2k • written 3.6 years ago by Mar Mar ▴ 20

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1.1k

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DiffBind MA plot normalization ChIP-seq

updated 3.8 years ago by Rory Stark ★ 5.2k • written 3.8 years ago by hasse.bossenbroek • 0

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1.3k

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chip-seq diffBind sequence_analysis

updated 3.8 years ago by Rory Stark ★ 5.2k • written 3.9 years ago by Mar Mar ▴ 20

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515

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DiffBind ChIP-seq

updated 3.9 years ago by Rory Stark ★ 5.2k • written 4.0 years ago by bioinfouser2 ▴ 10

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1.3k

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diffbind chip-seq chip spike spike-ins

updated 3.9 years ago by Rory Stark ★ 5.2k • written 4.1 years ago by Theo ▴ 10

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707

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chipqc chip-seq

4.1 years ago tuteja.reetu • 0

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753

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RNA-seq ChIP-seq Job

4.3 years ago Johannes Rainer ★ 2.0k

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957

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csaw chip-seq

updated 4.4 years ago by Aaron Lun ★ 28k • written 4.4 years ago by ATpoint ★ 4.1k

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1.4k

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TranscriptR RNA-seq ChIP-seq

updated 4.5 years ago by James W. MacDonald 65k • written 4.6 years ago by jason.williams • 0

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913

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diffbind chip-seq dba.peakset

updated 4.6 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by Theo ▴ 10

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839

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diffbind chip-seq

updated 4.6 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by melnuesch ▴ 10

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1.5k

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single cell sequencing RNA-Seq ChIP-Seq ATAC-Seq Job

4.9 years ago • updated 4.7 years ago Julie Zhu ★ 4.3k

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1.4k

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ChIP-seq ChIPQC QC

updated 4.8 years ago by zhenfeng.liu1 ▴ 20 • written 5.2 years ago by star ▴ 10

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2.8k

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chip-seq peak calling diffbind

updated 5.0 years ago by Rory Stark ★ 5.2k • written 5.0 years ago by aviv.de-morgan • 0

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889

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R chip-seq histone chip-seq ggbio

5.4 years ago Ramiro Magno ▴ 100

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1.2k

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re-annotation affymetrix microarrays chip-seq affymetrix mouse gene arrays

5.5 years ago 2323982403 ▴ 60

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870

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normalization chip-seq

5.5 years ago Bogdan ▴ 670

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1.4k

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ChIP-seq csaw

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Nicolas Servant ▴ 260

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918

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diffbind chip-seq R

5.6 years ago pierre.marin • 0

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1.0k

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chip-seq normalization

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Nicolas Servant ▴ 260

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2.2k

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chip-seq granges R bed files

updated 5.8 years ago by spotifywebplayer • 0 • written 5.8 years ago by jinseok • 0

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1.6k

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ChIP-seq chippeakanno chipseeker

5.8 years ago 94133 • 0

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1.4k

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csaw software error R chip-seq bioconductor

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by 94133 • 0

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2.2k

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diffbind macs2 chip-seq

6.5 years ago chunhong.liu07 ▴ 10

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1.2k

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ChIPQC chip-seq

6.5 years ago nbkingsley • 0

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2.4k

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DiffBind dba.count Chip-Seq Differential analysis

updated 3.2 years ago by Goku • 0 • written 6.7 years ago by urjaswita ▴ 40

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1.2k

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csaw histone chip-seq chip-seq

updated 6.7 years ago by Aaron Lun ★ 28k • written 6.7 years ago by gil.hornung • 0

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1.7k

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chip-seq

updated 6.7 years ago by Hervé Pagès 16k • written 6.7 years ago by gnani.science • 0

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1.5k

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soGGi chip-seq region

updated 6.7 years ago by Thomas Carroll ▴ 420 • written 6.8 years ago by 835102330 • 0

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2.4k

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csaw edger chip-seq

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by jms1223 ▴ 10

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1.4k

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diffbind chip-seq

updated 6.8 years ago by Gord Brown ▴ 650 • written 6.9 years ago by AA ▴ 10

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1.5k

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chipseeker chip-seq annotation Guangchuang

updated 6.9 years ago by Guangchuang Yu ★ 1.2k • written 6.9 years ago by anupriyaverma1408 • 0

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855

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chip-seq meta-analysis

6.9 years ago rezapanahi222 • 0

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921

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chip-seq

updated 7.2 years ago by Wolfgang Huber ★ 13k • written 7.2 years ago by Bogdan ▴ 670

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1.6k

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diffbind edger deseq2 chip-seq

updated 7.3 years ago by Rory Stark ★ 5.2k • written 7.3 years ago by siklenkak • 0

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1.9k

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diffbind chip-seq normalization deseq2 tmm

updated 7.3 years ago by Rory Stark ★ 5.2k • written 7.3 years ago by siklenkak • 0

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2.0k

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csaw chip-seq histone

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by siklenkak • 0

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2.3k

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csaw chip-seq normalization edger cqn

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by s1437643 ▴ 20

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1.1k

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diffbind chip-seq

updated 7.7 years ago by Rory Stark ★ 5.2k • written 7.7 years ago by D.Hemerich • 0

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1.3k

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chip-seq differential binding analysis

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by damian.kao • 0

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4.0k

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diffbind chip-seq

updated 7.8 years ago by Rory Stark ★ 5.2k • written 7.8 years ago by sarah.blackstone7734 • 0

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2.0k

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diffbind ChIP-seq

updated 3 months ago by Rory Stark ★ 5.2k • written 7.9 years ago by xie186 • 0

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1.8k

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deseq2 chip-seq Differential binding

7.9 years ago p2016k • 0

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3.3k

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chip-seq TSS TMM csaw

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by saadmurtazakhan ▴ 10

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991

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algorithms ChIP-seq cancer Job

8.0 years ago valentina.boeva • 0

50 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Comment: maSigPro genes from clusters by anne-laure • 0

Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

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