Showing : DMRcate • reset
0
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9
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19k
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dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
updated 7.4 years ago by ▴ 180 • written 7.6 years ago by • 0
1
vote
10
replies
3.0k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.2 years ago by ▴ 180 • written 7.2 years ago by ▴ 10
0
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11
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3.8k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 3 months ago by ▴ 180 • written 7.1 years ago by ★ 2.0k
2
votes
18
replies
5.0k
views
DMRcate results cg ID of significant DMR
dmrcate
updated 5.9 years ago by • 0 • written 8.0 years ago by ▴ 160
0
votes
3
replies
1.9k
views
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 6.9 years ago by ▴ 90 • written 6.9 years ago by • 0
1
vote
2
replies
400
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 14 days ago by 50k • written 14 days ago by • 0
2
votes
6
replies
1.9k
views
Bumphunting for longitudinal data
bumphunter minfi lmer dmrcate dmr analysis
updated 6.0 years ago by ▴ 180 • written 6.0 years ago by • 0
3
votes
4
replies
1.1k
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
updated 3.6 years ago by ▴ 180 • written 3.6 years ago by ▴ 10
2
votes
6
replies
1.5k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 6 weeks ago by ▴ 180 • written 5 months ago by ▴ 10
1
vote
15
replies
2.3k
views
DMRcate results meanpvals
dmrcate
updated 7.9 years ago by ▴ 180 • written 7.9 years ago by ▴ 160
0
votes
5
replies
2.2k
views
DMRcate cpg.annotate error: "Error in data.frame"
dmrcate
8.5 years ago par.larsson • 0
1
vote
3
replies
1.3k
views
DMRcate liftover to grch38
hg19 liftover matrixeqtl DMRcate
updated 5.0 years ago by 65k • written 5.0 years ago by ▴ 10
0
votes
2
replies
1.2k
views
cpg.annotate model requirements
DMRcate ChAMP
updated 4.8 years ago by ▴ 290 • written 4.8 years ago by • 0
0
votes
3
replies
1.4k
views
Significant DMRs in genes with no single significant CpG using limma
DMRcate
updated 4.8 years ago by ▴ 180 • written 4.8 years ago by • 0
3
votes
5
replies
1.4k
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
updated 4.6 years ago by 65k • written 4.6 years ago by ▴ 10
1
vote
8
replies
1.8k
views
extract CpGs from DMRcate results
dmrcate cpgs results.ranges DMRcate
updated 4.0 years ago by ▴ 180 • written 4.0 years ago by ▴ 40
4
votes
9
replies
3.0k
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate differencial methylation
updated 2.6 years ago by ▴ 30 • written 3.9 years ago by ▴ 10
0
votes
6
replies
1.3k
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 2.8 years ago by ▴ 10 • written 3.8 years ago by ▴ 10
0
votes
2
replies
598
views
EPIC array hg38 annotation?
minfi DMRcate
3 months ago mycetes • 0
0
votes
3
replies
3.1k
views
DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 9.1 years ago by ▴ 180 • written 9.1 years ago by ▴ 120
1
vote
1
reply
1.5k
views
DMRcate: phenotype variable with multiple levels
dmr analysis dmrcate
updated 8.8 years ago by ▴ 370 • written 8.8 years ago by • 0
2
votes
2
replies
2.4k
views
DMRcate cpg.annotate error
dmrcate design matrix
updated 8.5 years ago by ▴ 180 • written 8.5 years ago by ▴ 160
0
votes
1
reply
988
views
conflicts in chromosome number
DMRcate
updated 7.9 years ago by ▴ 180 • written 7.9 years ago by • 0
0
votes
1
reply
991
views
Betacutoff is not used in dmrcate function.
DMRcate
updated 7.4 years ago by ▴ 180 • written 7.4 years ago by • 0
1
vote
2
replies
1.2k
views
DMRcate error in extractCoords function
software error DMRcate extractRanges
updated 7.3 years ago by ▴ 180 • written 7.3 years ago by ▴ 10
0
votes
2
replies
1.4k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 7.3 years ago by ▴ 180 • written 7.3 years ago by • 0
0
votes
1
reply
1.5k
views
DMRcate: Scaling factor for bandwidth
dmrcate dmr analysis dmr
updated 7.3 years ago by ▴ 180 • written 7.3 years ago by ▴ 10
1
vote
3
replies
1.5k
views
coef in dmrcate
dmrcate bumphunter methylation epic
updated 7.1 years ago by 65k • written 7.1 years ago by ▴ 10
1
vote
2
replies
1.5k
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate dmrcate methylation
updated 7.0 years ago by ▴ 180 • written 7.0 years ago by • 0
1
vote
2
replies
1.0k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 25 days ago by ▴ 180 • written 14 months ago by ▴ 10
0
votes
1
reply
929
views
Same error that DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
updated 2.6 years ago by 65k • written 2.6 years ago by ▴ 30
0
votes
2
replies
1.0k
views
DMRcate: how to compare two comparisons and whether replicate is necessary
DMRcate WGBS biological_replicate
2.6 years ago xie186 • 0
2
votes
6
replies
1.7k
views
DMRcate
DMRcate R DMRcatedata Markdown
15 months ago yr542 • 0
0
votes
1
reply
760
views
DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate DMR.plot
updated 6 months ago by 3.9k • written 6 months ago by • 0
0
votes
5
replies
621
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 6 months ago by 65k • written 6 months ago by ▴ 10
0
votes
1
reply
502
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 9 months ago by ▴ 180 • written 9 months ago by • 0
3
votes
2
replies
300
views
Question about DMRcate
DMRcate dmrcate
3 months ago chuanjiao6 • 0
2
votes
2
replies
1.7k
views
DMRcate error: object 'annotated' not found
dmrcate error
updated 8.4 years ago by ▴ 180 • written 8.4 years ago by • 0
1
vote
2
replies
1.5k
views
DMRcate extractRanges error
DMRcate
3.2 years ago macsue.jacques ▴ 10
2
votes
6
replies
1.1k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 12 months ago by ▴ 180 • written 12 months ago by • 0
3
votes
4
replies
906
views
DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
7 months ago Jitendra ▴ 10
0
votes
0
replies
754
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
3.5 years ago Mike ▴ 10
8
votes
7
replies
1.2k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 5 months ago by ▴ 30
0
votes
0
replies
643
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
15 months ago gilliangoobie • 0
0
votes
0
replies
855
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
2.4 years ago Ahdee ▴ 50
0
votes
2
replies
799
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
3.8 years ago zh9118 • 0
0
votes
0
replies
106
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation DMRcate
6 weeks ago Macsue • 0
0
votes
0
replies
144
views
What is the significance of DMR in DMRcate
DMRcate
3 months ago chuanjiao6 • 0
6
votes
12
replies
1.8k
views
Error when loading DMRcate
DMRcate
15 months ago Bazingastats • 0
0
votes
3
replies
1.6k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate gene symbol coordinate
5.9 years ago 574233829 • 0
50 results • Page 1 of 1
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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