5.1 years ago
Matthew Thornton
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1.3k
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3
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933
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pcantalupo
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4
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5
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2.4k
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740
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5
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7
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2
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2
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1.1k
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0
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1.1k
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1
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927
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5
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1.2k
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2
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1.1k
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1
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170
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20
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1.9k
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1.1k
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360
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740
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0
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1
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676
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270
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50
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Comment: all variables in design formula must be columns in colData (Deseq2) error
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Galina
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thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
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ATpoint
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coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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robersy
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Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
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Hi Michael, thanks a lot for your prompt reply!
Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
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0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
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