Showing : Matrix • reset
1
vote
7
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6.8k
views
scater runUMAP fails with error "function 'as_cholmod_sparse' not provided by package 'Matrix'"
runUMAP scater Matrix
updated 11 weeks ago by 16k • written 6 months ago by ▴ 10
1
vote
2
replies
989
views
Which factors to include in design matrix and how to do it in a challenging experimental design
RNAseq Design Matrix
2.5 years ago Barista • 0
3
votes
2
replies
1.9k
views
DEXSeq throws a warning - rank-deficient matrix
dexseq fit matrix warning
updated 2.5 years ago by • 0 • written 7.3 years ago by ★ 1.5k
3
votes
7
replies
1.4k
views
small dimensions in the matrix of counts from smallRNA using DESEq2
matrix DESeq2 SmallRNA dimensions small
2.7 years ago andreia ▴ 10
2
votes
3
replies
1.2k
views
Differential expression error in edgeR - maybe from design matrix?
design edgeR matrix RNA-seq MDplot
updated 3.0 years ago by 50k • written 3.0 years ago by • 0
1
vote
2
replies
897
views
How to construct matrix and fit linear model for this microarray?
microarray dge matrix makecontrasts limma
updated 3.8 years ago by 50k • written 3.8 years ago by ▴ 10
4
votes
8
replies
1.3k
views
problem in designing matrix and batch effect
edger rna-seq matrix
updated 4.4 years ago by 65k • written 4.4 years ago by • 0
2
votes
3
replies
1.4k
views
Filtering counts in SummarizedExperiment
diffbind matrix summarizedexperiment rangedCounts
updated 4.6 years ago by ★ 5.2k • written 4.6 years ago by ▴ 60
3
votes
7
replies
3.2k
views
Handle missing values in the z-score matrix while plotting heatmap in the ComplexHeatmap
matrix heatmap ComplexHeatmap missing values R
updated 4.7 years ago by ▴ 260 • written 4.7 years ago by ▴ 10
2
votes
4
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1.1k
views
Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 4.8 years ago by ▴ 30 • written 4.8 years ago by ▴ 10
3
votes
1
reply
2.0k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 4.9 years ago by ▴ 310 • written 4.9 years ago by • 0
3
votes
4
replies
1.3k
views
Paired analysis (tumor vs normal) at three different conditions with EdgeR
edger design matrix de
updated 5.2 years ago by ★ 28k • written 5.2 years ago by ▴ 10
1
vote
2
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954
views
want the piece of the matrix I wanted
matrix
updated 5.9 years ago by ★ 1.0k • written 5.9 years ago by ▴ 20
0
votes
5
replies
1.3k
views
DESeq2 design formula - correlation with ordered variable
DESeq2 design formula matrix
updated 6.0 years ago by 42k • written 6.0 years ago by ▴ 170
3
votes
2
replies
798
views
Scoring a seq based on a matrix
matrix
updated 6.0 years ago by 25k • written 6.0 years ago by • 0
10
votes
7
replies
2.5k
views
SummarizedExperiment object from GEOquery obtained GSE
geoquery summarizedexperiment GEO matrix
updated 6.4 years ago by 21k • written 6.4 years ago by ▴ 60
0
votes
7
replies
2.3k
views
Deseq2 no package Matrix found
deseq2 bioconductor matrix
6.6 years ago victoria.carla.moris • 0
3
votes
8
replies
2.6k
views
S4Vectors masks/breaks regular Matrix functions
S4Vectors Matrix
7.3 years ago peter.kharchenko ▴ 30
1
vote
2
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1.3k
views
sva :: sva can variable of interest be a matrix itself?
sva variable of ineterest matrix
updated 7.5 years ago by ▴ 650 • written 7.5 years ago by • 0
0
votes
1
reply
870
views
[General] compare matrix to vector higher/lower
matrix
updated 8.7 years ago by ▴ 370 • written 8.7 years ago by • 0
1
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3
replies
2.4k
views
[DiffBind] Memory issues with dba.count()
diffbind bigmemory matrix dba.count
updated 8.8 years ago by ★ 5.2k • written 8.8 years ago by ▴ 660
0
votes
4
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1.7k
views
reading in data and transform it to matrix format
matrix text
8.8 years ago Angel ▴ 40
22 results • Page 1 of 1
Recent ...
Replies
Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 65k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 65k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat by minardsmitha ▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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