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Showing :
affymetrixchip
•
reset
0
votes
4
replies
413
views
Unable to annotate ExpressionSet object from hugene11st chip
oligo
limma
hugene11stprobeset.db
AffymetrixChip
8 weeks ago • updated 7 weeks ago
Efra
• 0
0
votes
1
reply
511
views
Affymetrix hgu133plus2.db: How to best derive an expression value for genes that map to multiple probe ids
affydata
hgu133plus2.db
AffymetrixChip
updated 10 months ago by
ATpoint
★ 4.1k • written 10 months ago by
Matthias Munz
▴ 10
1
vote
2
replies
524
views
Affymetrix analysis Chiptype hgu133plus2hsentrezg.db vs hgu133plus2.db
hgu133plus2hsentrezg.db
chiptype
chipster
hgu133plus2.db
AffymetrixChip
11 months ago
alexia.brunel
• 0
1
vote
4
replies
712
views
How to annotate mir4.1 arrays?
AffymetrixChip
miRNA
oligo
12 months ago • updated 9 months ago
richardallenfriedmanbrooklyn
▴ 20
0
votes
0
replies
536
views
Volcano plot
limma
AffymetrixChip
12 months ago
e.gunaut
• 0
2
votes
2
replies
682
views
Question about transforming log expression values to antilog values in limma
IlluminaChip
limma
AffymetrixChip
Normalization
Microarray
13 months ago
Abdul
▴ 20
1
vote
1
reply
778
views
Strange error with RMA during Affymetrix data analysis
AffymetrixChip
RMA
updated 18 months ago by
Mike Smith
★ 6.5k • written 18 months ago by
Sara
▴ 10
2
votes
2
replies
576
views
2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip
MicroarrayData
Anova
19 months ago
evan.j.williams
▴ 10
2
votes
2
replies
878
views
How to compute P/A calls at gene-level probeset of Human Gene 1.0 ST Array
pd.hugene.1.0.st.v1
oligo
AffymetrixChip
23 months ago
Yang Shi
▴ 10
2
votes
5
replies
1.1k
views
Equivalence between PSDABG and Logarithmic Intensity Error (PLIER) Estimation
pd.hugene.1.0.st.v1
oligo
AffymetrixChip
23 months ago
Yang Shi
▴ 10
2
votes
4
replies
1.2k
views
Robust Multi-array Average could get negative value or not?
pd.hg.u219
oligo
AffymetrixChip
2.0 years ago
Yang Shi
▴ 10
4
votes
10
replies
1.9k
views
Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
pd.hg.u219
Microarray
oligo
AffymetrixChip
2.0 years ago
Yang Shi
▴ 10
0
votes
2
replies
782
views
How to extract probe level intensity after rma() normalization
MicroarrayData
AffymetrixChip
updated 2.0 years ago by
James W. MacDonald
65k • written 2.1 years ago by
Haoran
• 0
0
votes
4
replies
931
views
getProbeInfo and exprs return two different dimensions
CELfile
MicroarrayData
AffymetrixChip
2.2 years ago • updated 2.1 years ago
Haoran
• 0
2
votes
2
replies
998
views
Subscript out of bounds while normalising using affy::rma()
Normalization
affy
AffymetrixChip
3.0 years ago
geoffrey
▴ 10
0
votes
1
reply
883
views
Microarray: Build annotation for HT MG430PM affymetrix
AffymetrixChip
Microarray
affymetrix
updated 3.1 years ago by
Guido Hooiveld
★ 4.0k • written 3.1 years ago by
Pierre-Alex
• 0
3
votes
2
replies
1.5k
views
Trouble getting probe ID info from mouse4302.db annotation package with a specific RefSeq ID.
annotationdbi
mouse4302
affymetrixchip
annotationdata
R
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
koreebay
• 0
0
votes
4
replies
2.3k
views
HUgene 2.0 analyses heatmap
hugene20
heatmap
affymetrixchip
updated 9.0 years ago by
alakatos
▴ 130 • written 9.0 years ago by
kanacska
▴ 10
2
votes
5
replies
3.0k
views
miRNA expression analysis : annotation
miRNA
annotation
affymetrixchip
9.1 years ago
aswathym
▴ 10
0
votes
0
replies
1.2k
views
Correst use of GeneOverlap R Package
GeneOverlap
DEGgenes
affymetrixchip
bioconductor
9.1 years ago
svlachavas
▴ 830
1
vote
3
replies
1.5k
views
BioNet package network analysis important questions for tutorial
BioNet
bioconductor
affymetrixchip
network analysis
9.2 years ago
svlachavas
▴ 830
5
votes
9
replies
3.1k
views
Merge different datasets regarding a common number of DE genes in R
bioconductor
expresiondataset
affymetrixchip
differential gene expression
9.2 years ago
svlachavas
▴ 830
1
vote
4
replies
3.4k
views
GeneChip Human Transcriptome Array 2.0 analysis in R for identifying possible differential exon splicing events
affymetrixchip
GenechipHumanTranscriptomeArray2.0
exon array analysis
9.2 years ago
svlachavas
▴ 830
3
votes
11
replies
3.5k
views
Filtering on present/absent calls methodology and perfect match only arrays
bioconductor
mas5
perfectmatch
affymetrixchip
filter
updated 9.2 years ago by
James W. MacDonald
65k • written 9.2 years ago by
svlachavas
▴ 830
0
votes
0
replies
2.2k
views
MAplot: Binning grid too coarse for current (small) bandwidth
affy
affymetrix
affymetrics
affymetrixchip
9.3 years ago
neverstop
• 0
0
votes
1
reply
1.9k
views
Having trouble with new brainarray CDF
Microarray
Annotation
AnnotationData
AffymetrixChip
hgu133a2
cdf
probe
graph
AnnotationDbi
updated 13.0 years ago by
Marc Carlson
★ 7.2k • written 13.0 years ago by
Martha Behnke
▴ 100
26 results • Page
1 of 1
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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