Showing : canceR • reset
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heatmap.2 - change column & row locations; angle / rotate
Cancer Cancer
written 10.5 years ago by ▴ 10
0
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1
reply
561
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BioC packages in cancer genomics
genomics cancer
updated 15 months ago by ★ 3.9k • written 15 months ago by ▴ 670
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0
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608
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Job: Postdoctoral Fellow – Computational Biology (Genetic Interactions in Cancer)
geneticinteractions cancer networks machine_learning
15 months ago Colm • 0
0
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0
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734
views
Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer bioinformatics proteomics genomics phd
18 months ago DKFZ International PhD Program ▴ 10
1
vote
0
replies
794
views
Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
22 months ago Andy Lynch ▴ 120
0
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0
replies
765
views
Calculating tumour purity having only CNA data
PureCN CNA purity cancer
23 months ago JAcky • 0
0
votes
0
replies
767
views
Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
24 months ago Sarah • 0
0
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1
reply
1.2k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 20.3 years ago by ▴ 810
1
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0
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758
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
2.1 years ago DKFZ International PhD Program ▴ 10
0
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1
reply
727
views
WGCNA
Cancer
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by • 0
0
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0
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854
views
Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia cancer wehi
3.1 years ago • updated 2.7 years ago Gordon Smyth 50k
0
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0
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873
views
Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
3.2 years ago Daniel Brewer ▴ 100
0
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0
replies
929
views
Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
3.4 years ago Daniel Brewer ▴ 100
0
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0
replies
965
views
Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
3.6 years ago Daniel Brewer ▴ 100
2
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13
replies
1.4k
views
Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 3.7 years ago by 42k • written 3.7 years ago by • 0
4
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7
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1.5k
views
Limma sample groups
microarray limma affy cancer
updated 3.7 years ago by 50k • written 3.7 years ago by • 0
0
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5
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2.1k
views
TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by ▴ 10
1
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6
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2.2k
views
TCGA: clinical data and expression data
microarray annotation cancer
updated 15 months ago by • 0 • written 3.7 years ago by • 0
0
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5
replies
2.0k
views
Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 3.7 years ago by 42k • written 3.7 years ago by • 0
0
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0
replies
841
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Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
4.3 years ago • updated 3.9 years ago Daniel Brewer ▴ 100
4
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10
replies
2.6k
views
how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by ▴ 10
1
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2
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3.9k
views
Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 4.1 years ago by ★ 3.9k • written 4.2 years ago by • 0
0
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3
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1.3k
views
Topgo, Deseq and KEGG pathway
annotation cancer
updated 4.1 years ago by 3.9k • written 4.1 years ago by • 0
0
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1
reply
1.0k
views
WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 4.2 years ago by ★ 3.0k • written 4.2 years ago by • 0
0
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0
replies
1000
views
Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
4.3 years ago Shamith.Samarajiwa ▴ 180
0
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0
replies
892
views
Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
4.3 years ago Patrick Kimes ▴ 10
0
votes
0
replies
965
views
Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
4.5 years ago • updated 4.4 years ago marschaefer • 0
0
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0
replies
691
views
Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
4.4 years ago luciomora8 • 0
0
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0
replies
854
views
Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
4.5 years ago Daniel Brewer ▴ 100
2
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3
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1.2k
views
DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 4 months ago by • 0 • written 4.5 years ago by • 0
0
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0
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578
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miRNA and drugs
cancer
4.5 years ago maria.k.pagoni • 0
1
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0
replies
1.1k
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Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
4.7 years ago • updated 4.6 years ago Shamith.Samarajiwa ▴ 180
1
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0
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1.0k
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Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
4.7 years ago • updated 4.6 years ago Shamith.Samarajiwa ▴ 180
0
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0
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882
views
Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
4.6 years ago Johannes Rainer ★ 2.0k
1
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4
replies
1.3k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 4.6 years ago by ▴ 120 • written 4.6 years ago by • 0
2
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1
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2.4k
views
How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 4.7 years ago by ▴ 830 • written 4.7 years ago by ▴ 20
0
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0
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773
views
Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
4.7 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
927
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
4.7 years ago sheneicechang • 0
0
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0
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706
views
News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
4.7 years ago Ning Leng • 0
0
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5
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1.9k
views
RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
4.9 years ago mah19 • 0
0
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0
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829
views
MatchGenes in Bumphunter - result list with multiple genes
cancer
4.9 years ago hanna_engqvist • 0
1
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0
replies
1.5k
views
Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
5.1 years ago • updated 5.0 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
865
views
Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
5.0 years ago jmaanaki • 0
0
votes
2
replies
935
views
Chromosomal location mapping for miRNAs
cancer
updated 5.0 years ago by 66k • written 5.0 years ago by ▴ 10
0
votes
3
replies
988
views
Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 5.0 years ago by 42k • written 5.0 years ago by • 0
1
vote
4
replies
1.0k
views
DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 5.0 years ago by 42k • written 5.0 years ago by • 0
4
votes
1
reply
8.8k
views
WGCNA-unable to install GO.db package
go cancer
updated 5.1 years ago by 25k • written 5.1 years ago by ▴ 20
0
votes
1
reply
778
views
Help installing netReg
netReg cancer
5.1 years ago sbrackett007 • 0
2
votes
4
replies
1.2k
views
SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
5.1 years ago s.goncalvesclaro ▴ 10
0
votes
0
replies
861
views
Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.2 years ago Shamith.Samarajiwa ▴ 180
50 results • Page 1 of 1
Recent ...
Replies
Comment: Deseq2 by Ram ▴ 210
Cross-posted on biostars: https://www.biostars.org/p/9596031/
Comment: SpliceWiz collateData error by giulia.nicoletto.1 • 0
Hi there, I am facing a similar error. When I try the collateData command collateData( Experiment = expr, reference_path = "./Referen…
Answer: Best way to describe DEseq2 design by SamGG ▴ 350
Hi, My own opinion. In the design `~ Batch`, ChemicalA_t1 is the intercept. So, all coefficients refer to this level as a reference. …
Answer: Deseq2 by ATpoint ★ 4.2k
Ser the vignette https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html It covers prefiltering (and everyt…
Comment: Counter-directional LFC shrinkage by Michael Love 42k
Gene 1 is hard to predict given the paucity of data for the comparison of interest. What is happening is that the relatively low dispersion…
Votes
Answer: Deseq2
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: When should I correct for batch effects
Answer: When should I correct for batch effects
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