Showing : clusterprofiler • reset
2
votes
9
replies
1.3k
views
object HPOGENE is not exported by namespace HPO.db
clusterProfiler HPO.db
updated 7 months ago by ▴ 50 • written 7 months ago by ▴ 30
1
vote
10
replies
4.0k
views
Issue of clusterprofiler package
clusterprofiler
updated 7.5 years ago by ★ 1.2k • written 7.5 years ago by • 0
3
votes
7
replies
4.6k
views
clusterProfiler - GeneRatio & nb of genes always positively correlated in dotplot
clusterProfiler
7.6 years ago • updated 7.5 years ago Jane Merlevede ▴ 90
2
votes
4
replies
2.6k
views
Problem with BuildGOmap() in clusterProfiler
clusterprofiler
7.5 years ago Marcus • 0
4
votes
6
replies
3.8k
views
Pathview unable to download pathways
clusterProfiler KEGGgraph clusterpr KEGG pathview
updated 21 months ago by ★ 4.0k • written 23 months ago by ▴ 10
1
vote
4
replies
3.1k
views
clusterProfiler - interpretation of enrichMap
clusterprofiler
updated 6.8 years ago by • 0 • written 7.6 years ago by ▴ 90
1
vote
13
replies
14k
views
GeneList issue ClusterProfiler
genelist clusterprofiler
7.0 years ago bhgyu ▴ 30
2
votes
6
replies
3.2k
views
leading edge analysis clusterProfiler DOSE custom GSEA
clusterprofiler DOSE GSEA_internal USER_DATA leading edge Analysis
7.7 years ago Riba Michela ▴ 90
3
votes
3
replies
3.3k
views
problem reinstalling Bioconductor package 'clusterProfiler' after updating R to 3.4.0
clusterprofiler package installation r update
updated 7.0 years ago by ▴ 10 • written 7.1 years ago by ▴ 10
1
vote
7
replies
1.5k
views
Adding geneID to list of gene locus IDs
cluster OrgDb clusterProfiler
written 18 months ago by • 0
1
vote
3
replies
1.7k
views
buildKEGGmap doesn´t work - library(clusterProfiler)
clusterprofiler software error
updated 9.0 years ago by ★ 1.2k • written 9.0 years ago by ▴ 30
1
vote
4
replies
4.8k
views
ClusterProfiler: enrichGO / compareCluster and Pvalue threeshold
clusterprofiler
updated 9.1 years ago by ★ 1.2k • written 9.1 years ago by ▴ 140
1
vote
4
replies
3.0k
views
Problem retrieving graphics in clusterprofiler
software error clusterprofiler GO genesetenrichment
8.1 years ago José Luis Lavín ▴ 10
0
votes
13
replies
2.9k
views
EnrichGO not working with db created from annotationhub
clusterProfiler AnnotationHubData GO
updated 2.0 years ago by ★ 4.0k • written 2.0 years ago by ▴ 10
0
votes
5
replies
9.6k
views
Cannot install clusterProfiler
clusterprofiler biocinstaller
updated 2.5 years ago by ▴ 10 • written 6.0 years ago by • 0
2
votes
2
replies
3.4k
views
Is it possible to coerce dataframe to enrichResult class in clusterProfiler?
clusterprofiler
updated 2.5 years ago by • 0 • written 7.5 years ago by ▴ 40
2
votes
4
replies
3.1k
views
#clusterProfiler# KEGG enrichment with non-reference species
clusterprofiler kaas enrichKEGG
updated 6.9 years ago by • 0 • written 7.7 years ago by • 0
3
votes
5
replies
3.3k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 21 months ago by ★ 1.2k • written 24 months ago by ▴ 30
0
votes
2
replies
1.3k
views
Returning less assigned genes than expected
clusterprofiler
7.8 years ago David ▴ 860
1
vote
2
replies
1.5k
views
clusterProfiler: enrichDavid produces NA values
clusterProfiler
7.8 years ago n.kreim ▴ 20
0
votes
2
replies
2.2k
views
library(clusterProfiler) cnetplot(fixed = F): why can´t I get the color legend?
clusterprofiler tkplot
8.5 years ago cristina della beffa ▴ 30
1
vote
7
replies
2.0k
views
Problem with universe argument in enrichKEGG
KEGG clusterProfiler keggorthology
updated 15 months ago by ▴ 780 • written 15 months ago by ▴ 10
2
votes
4
replies
2.2k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 18 months ago by • 0
2
votes
2
replies
253
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 5 weeks ago by 66k • written 5 weeks ago by • 0
6
votes
2
replies
4.4k
views
help with clusterProfiler enricher function
clusterprofiler
8.1 years ago naholi.alejandri ▴ 50
0
votes
3
replies
2.2k
views
enrichGO() for unsupported organisms - library(clusterProfiler)
clusterProfiler go annotation
9.0 years ago cristina della beffa ▴ 30
2
votes
5
replies
3.3k
views
How to use EnrichGo of Cluster Profiler
EnrichGO clusterProfiler
written 3.4 years ago by • 0
0
votes
5
replies
2.1k
views
GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 24 months ago by 66k • written 24 months ago by ▴ 10
4
votes
4
replies
4.3k
views
Clarifications on p-values in enrichResult objects
clusterProfiler reactomepa dose
updated 19 months ago by • 0 • written 7.7 years ago by ▴ 660
1
vote
8
replies
1.8k
views
enrichGOgradient color change
clusterProfiler
updated 6 days ago by • 0 • written 6 months ago by • 0
4
votes
4
replies
3.8k
views
Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
clusterProfiler GO GO enrichment genesetenrichment
updated 10 weeks ago by • 0 • written 6.5 years ago by ▴ 20
3
votes
5
replies
2.3k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview clusterProfiler KEGGpath visualization Graphviz
updated 8.5 years ago by ★ 1.6k • written 8.6 years ago by ▴ 830
0
votes
6
replies
7.2k
views
question on GO analysis using clusterProfiler
clusterprofiler geneontology
updated 6.6 years ago by ▴ 160 • written 6.6 years ago by • 0
0
votes
5
replies
1.9k
views
enrichGO returning NA
clusterprofiler org.hs.eg.db
updated 6.4 years ago by ★ 1.2k • written 6.4 years ago by • 0
0
votes
5
replies
2.6k
views
Questions on using clusterProfiler
clustering clusterprofiler
7.6 years ago zhangducsu • 0
0
votes
3
replies
7.5k
views
clusterProfiler - how does showCategory work in dotplot from compareClusterResult class?
clusterprofiler
7.6 years ago Jane Merlevede ▴ 90
3
votes
4
replies
4.0k
views
Sort clusterProfiler result
clusterProfiler sort
updated 6.9 years ago by • 0 • written 8.7 years ago by ▴ 10
0
votes
2
replies
2.4k
views
clusterProfiler - interpretation of plotGOgraph
clusterprofiler topgo
7.6 years ago Jane Merlevede ▴ 90
1
vote
5
replies
2.0k
views
About the state of KEGG-related packages
KEGGSOAP KEGGgraph keggorthology clusterProfiler KEGGprofile PathNet KEGGSOAP KEGGgraph
updated 10.8 years ago by ★ 1.6k • written 10.8 years ago by ▴ 660
8
votes
6
replies
4.3k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
updated 6 days ago by ▴ 30 • written 5.1 years ago by ▴ 160
0
votes
3
replies
2.7k
views
eroor mssage using gseKEGG
clusterprofiler
6.8 years ago bruno.saubamea • 0
1
vote
5
replies
2.8k
views
clusterProfiler - get symbol from GSEA results
clusterProfiler
updated 7.5 years ago by ★ 1.2k • written 7.5 years ago by ▴ 90
0
votes
6
replies
3.6k
views
clusterProfiler: different runs return different results for gse functions
clusterprofiler
updated 3.1 years ago by ▴ 10 • written 6.8 years ago by • 0
0
votes
2
replies
1.2k
views
GO annotation missing in org.EcSakai.eg.db?
org.EcSakai.eg.db Annotation go clusterProfiler
updated 8.9 years ago by 66k • written 8.9 years ago by ★ 1.2k
1
vote
1
reply
3.5k
views
compareCluster on Mus musculus
clusterprofiler
5.4 years ago unamourdeswann ▴ 10
0
votes
1
reply
1.6k
views
Add title to enrichMap and cnetplot plots
clusterprofiler
updated 7.8 years ago by ★ 1.2k • written 7.8 years ago by ▴ 860
1
vote
2
replies
2.9k
views
cnetplot() - library(clusterProfiler)
clusterProfiler network
9.0 years ago cristina della beffa ▴ 30
0
votes
9
replies
2.8k
views
clusterProfiler setup specified order
clusterProfiler
7.1 years ago joseph ▴ 50
0
votes
1
reply
2.5k
views
ClusterProfiler can't load gmt file
GSEA clusterprofiler gmt
updated 7.8 years ago by ★ 1.2k • written 7.8 years ago by • 0
0
votes
6
replies
8.7k
views
No gene can be mapped error with clusterprofiler
clusterprofiler r
updated 4 months ago by ★ 4.0k • written 7.4 years ago by • 0
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Comment: How to run allelic imbalance in apeglm by parayod376 • 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
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FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
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If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
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Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
Votes
Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
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