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ensembl
•
reset
1
vote
0
replies
242
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
4 months ago
Benjamin
▴ 30
3
votes
2
replies
455
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
6 months ago • updated 5 months ago
henrydionne
▴ 10
1
vote
2
replies
640
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
10 months ago • updated 9 months ago
Miguel
• 0
0
votes
2
replies
1.1k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt
ensembldb
RNA
ensembl
updated 13 months ago by
Johannes Rainer
★ 2.0k • written 13 months ago by
Christopher
• 0
5
votes
3
replies
1.5k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt
ensembldb
ensembl
19 months ago • updated 16 months ago
jamie.gearing
▴ 60
1
vote
2
replies
791
views
News:
Ensembl 108 has been released!
biomaRt
ensembldb
ensembl
written 19 months ago by
Louisse
▴ 10
0
votes
0
replies
660
views
biomaRt, Ensembl, retrieve "Phenotypes" information
Ensembl
biomaRt
21 months ago
Hector
• 0
7
votes
5
replies
7.1k
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
updated 7 months ago by
Ke
• 0 • written 2.1 years ago by
kieran.short
▴ 40
2
votes
0
replies
728
views
News:
News:Ensembl 106 has just been released!
ensembl
biomaRt
ensembldb
2.1 years ago
Benjamin
▴ 30
2
votes
3
replies
1.5k
views
Ensembl non responsive
ensembl
R
2.1 years ago
ksci
▴ 20
2
votes
1
reply
1.0k
views
Can Rsubread output use Ensembl gene IDs
Ensembl
Rsubread
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
agustin.gonvi
▴ 20
9
votes
11
replies
6.0k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 9 weeks ago by
shepherl
3.9k • written 2.3 years ago by
jon.klonowski
▴ 40
0
votes
3
replies
1.5k
views
biomaRT getBM() get stuck
biomaRt
getbm
ensembl
updated 2.4 years ago by
Mike Smith
★ 6.5k • written 2.4 years ago by
Ariel Simon
• 0
1
vote
0
replies
805
views
News:
Ensembl 105 has just been released!
ensembl
biomaRt
ensembldb
2.4 years ago
mchakiachvili
▴ 20
15
votes
13
replies
3.1k
views
celldex ensembl gene annotation issue
SingleR
celldex
HumanPrimaryCellAtlasData
ensembl
updated 2.5 years ago by
xiang
▴ 10 • written 2.5 years ago by
immuno.dh
▴ 20
0
votes
6
replies
1.8k
views
Getting paralogus genes from biomart for mouse
biomart
biomaRt
Ensembl
updated 2.8 years ago by
Kevin Blighe
★ 3.9k • written 2.8 years ago by
hemantcnaik
• 0
0
votes
2
replies
1.4k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
3.3 years ago • updated 3.1 years ago
mchakiachvili
▴ 20
1
vote
1
reply
1.3k
views
topGO question
Ensembl
ensembldb
updated 3.5 years ago by
James W. MacDonald
65k • written 3.5 years ago by
H. Stotz
• 0
0
votes
0
replies
798
views
News:
Ensembl 102 has been released
Ensembl
biomaRt
BioMar
ensembldb
3.5 years ago
mchakiachvili
▴ 20
5
votes
8
replies
14k
views
Ensembl site unresponsive
ensembl
biomart
updated 3.1 years ago by
tommaso.gastaldi
• 0 • written 3.6 years ago by
lirongrossmann
▴ 40
2
votes
11
replies
6.2k
views
biomaRT connexion problem make failed my unit tests
biomaRt
Peer's Certificate
Ensembl
updated 3.3 years ago by
Mike Smith
★ 6.5k • written 3.7 years ago by
ilysR
• 0
4
votes
17
replies
2.5k
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt
annotation
Ensembl
annotationHub
updated 3.7 years ago by
Kevin Blighe
★ 3.9k • written 3.7 years ago by
Didi
▴ 10
0
votes
1
reply
964
views
News:
Ensembl 101 hase been released
Ensembl
BioMart
News
3.8 years ago
mchakiachvili
▴ 20
1
vote
3
replies
2.6k
views
Convert mouse gene ids to hamster gene ids
biomart
R
ensembl
updated 15 months ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
rykerklie7
• 0
1
vote
0
replies
1.2k
views
News:
ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl
annotation
ensembldb
News
4.0 years ago
Johannes Rainer
★ 2.0k
1
vote
0
replies
798
views
News:
Ensembl 100 has been released
biomart
ensembl
e100
mart
news
News
4.1 years ago
Thomas Maurel
▴ 800
0
votes
4
replies
1.1k
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon
tximport
tximportdata
ensembl
updated 4.1 years ago by
Michael Love
42k • written 4.1 years ago by
slouis
• 0
1
vote
2
replies
1.4k
views
getBM biomart ensembl Error report
biomaRt
ensembl
updated 4.1 years ago by
Mike Smith
★ 6.5k • written 4.1 years ago by
nina.hahn
▴ 10
0
votes
1
reply
1.6k
views
ChIPSeeker with Ensembl IDs
chipseeker
Ensembl
EnsDb.Mmusculus.v79
ensembldb
4.1 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
2.0k
views
Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart
mart
ensembl
updated 4.1 years ago by
James W. MacDonald
65k • written 4.1 years ago by
didemdkn
• 0
0
votes
0
replies
588
views
News:
Changes to BioMart in Ensembl release 100 and Ensembl Genomes release 47
biomaRt
Ensembl
News
4.2 years ago
Astrid_Ensembl
• 0
4
votes
4
replies
1.7k
views
biomaRt getSequence fails with genomic coordinates
biomart
getSequence
genomic coordinates
ENSEMBL
bug report
updated 4.3 years ago by
Mike Smith
★ 6.5k • written 4.3 years ago by
Ni-Ar
▴ 10
0
votes
1
reply
702
views
Question regarding retrieving miRNA sequences from ENSEMBLE
ensembl
updated 4.3 years ago by
Michael Love
42k • written 4.3 years ago by
mohsamir2016
• 0
0
votes
0
replies
737
views
News:
Ensembl 99 has been released and renaming of species
biomart
ensembl
e99
mart
news
News
4.3 years ago
Thomas Maurel
▴ 800
4
votes
11
replies
2.0k
views
Dealing with duplicated genes in camera gene set testing
limma
camera
gene set testing
ensembl
updated 4.4 years ago by
Robert Castelo
★ 3.3k • written 4.4 years ago by
Jeremy Beales
▴ 10
1
vote
3
replies
2.3k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
4.4 years ago
dmgatti
▴ 10
0
votes
14
replies
1.7k
views
Error while opening Mart with biomaRt package
software error
ensembl
biomart
4.4 years ago
loicborcard01
• 0
0
votes
6
replies
981
views
Anyone else having trouble with biomaRt (Oct 10, 2019)
ensembl
biomaRt
updated 4.6 years ago by
Mike Smith
★ 6.5k • written 4.6 years ago by
swbarnes2
★ 1.4k
0
votes
7
replies
2.8k
views
BioMart does not find mouse homologs of human genes
biomart
homolog
ortholog
gene conversion
ensembl
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
atakanekiz
▴ 30
0
votes
0
replies
904
views
News:
Ensembl 98 has been released and renaming of species
biomart
ensembl
e98
mart
News
4.6 years ago
Thomas Maurel
▴ 800
0
votes
1
reply
739
views
Eliminate redundancy in biomaRt (2.38.0) query
biomaRt
Ensembl
updated 4.8 years ago by
Mike Smith
★ 6.5k • written 4.8 years ago by
olibee1315
• 0
0
votes
3
replies
1.4k
views
external_gene_id attribute removed from new biomaRt version
biomaRt
Ensembl
Ensemblplants
4.8 years ago
Didi
▴ 10
1
vote
0
replies
906
views
News:
ensembldb EnsDb databases for Ensembl release 97 added to AnnotationHub
annotation
ensembldb
Ensembl
News
4.9 years ago
Johannes Rainer
★ 2.0k
1
vote
0
replies
800
views
News:
Ensembl 97 has been released
biomart
ensembl
e97
News
4.9 years ago
James Allen
▴ 10
10
votes
8
replies
3.0k
views
Best alternative annotation package to BiomaRt
R
biomaRt
Ensembl
rnaseq
4.9 years ago
m93
▴ 10
0
votes
1
reply
1.1k
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string
biomart
ensembl
R
Bioconductor
4.9 years ago
lbuo
• 0
0
votes
4
replies
1.4k
views
Error message: "Request to BioMart web service failed."
BiocManager
biomaRt
listMarts()
ensembl
Biomart
updated 4.9 years ago by
Mike Smith
★ 6.5k • written 4.9 years ago by
ktd2918
• 0
3
votes
2
replies
1.2k
views
GEO Download - "The query to BioMart webservice returned an invalid result..."
biomart
geo
software error
ensembl
updated 4.9 years ago by
Mike Smith
★ 6.5k • written 4.9 years ago by
wes
▴ 10
1
vote
1
reply
1.1k
views
Gene biotype for a given symbol
ensembl
updated 4.9 years ago by
Johannes Rainer
★ 2.0k • written 4.9 years ago by
adai
• 0
1
vote
3
replies
1.6k
views
Scan error using biomart getBM with version option and host set
biomart
ensembl
getbm
5.0 years ago
Marc Saric
▴ 70
50 results • Page
1 of 1
Recent ...
Replies
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
65k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
65k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat
by
minardsmitha
▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons
by
boczniak767
▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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