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plotPCA
•
reset
0
votes
2
replies
409
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio
plotPCA
DESeq2
6 months ago • updated 5 months ago
yee
• 0
1
vote
5
replies
666
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 7 months ago by
Michael Love
42k • written 7 months ago by
sara.jacobson
• 0
0
votes
3
replies
3.2k
views
How to change the dot size in plotPCA?
plotPCA
PCA
updated 13 months ago by
hediatnani
• 0 • written 14 months ago by
Yijing
• 0
2
votes
4
replies
2.4k
views
Plot PC1 and PC4 in plotPCA function
DESeq2
plotPCA
2.3 years ago • updated 2.2 years ago
synat.keam
• 0
3
votes
3
replies
6.6k
views
Adding sample label to PCA plot
plotpca
DESeq2
2.4 years ago
bjen731
▴ 10
2
votes
2
replies
1.4k
views
How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA
DESeq2
RUVSeq
removebatcheffect()
3.0 years ago
elizabethe819
• 0
1
vote
1
reply
891
views
No result from plotPCA()
DESeq2
RNASeq
plotpca
updated 3.3 years ago by
Michael Love
42k • written 3.3 years ago by
s1760083
• 0
0
votes
3
replies
1.1k
views
Biplot environmental variables on top of PCA
deseq2
biplot
plotpca
updated 4.3 years ago by
Michael Love
42k • written 4.3 years ago by
ecg1g15
▴ 20
0
votes
1
reply
654
views
Comparisons between populations
deseq2
PlotPCA
draw.triple.venn
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
N. Perera
• 0
0
votes
1
reply
632
views
PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2
plotpca
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
snp31
• 0
12
votes
1
reply
7.2k
views
identifying the samples on plotPCA
deseq2
plotpca
PCa
updated 6.6 years ago by
Michael Love
42k • written 6.6 years ago by
lirongrossmann
▴ 80
0
votes
6
replies
3.2k
views
Different PCA plots using rlog and vsd on the same data set
deseq2
rlog
variancestabilizingtransformation
plotpca
pca
6.7 years ago • updated 6.6 years ago
lirongrossmann
▴ 80
2
votes
4
replies
3.1k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2
plotPCA
rlog transformation
vsd
6.8 years ago
Jane Merlevede
▴ 90
14
votes
5
replies
41k
views
plotPCA - how to add labels to a PCA plot
plotPCA
deseq2
labels
updated 7.4 years ago by
Federico Marini
▴ 150 • written 7.4 years ago by
al-ash
▴ 50
0
votes
0
replies
984
views
group vectors around pca origins into 5 degrees arc cluster
pca
plotpca
7.6 years ago
marianarochadesouza
• 0
0
votes
3
replies
1.5k
views
Trouble with Custom PC Plot
deseq2
plotPCA
PCA
rna-seq
8.0 years ago
newsomew13
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
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