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Answer: Answer: Can I adjust weights by group in dreamlet(), like in voomByGroup(), with a rando
4 days ago Gordon Smyth 51k
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581
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
5 days ago Gordon Smyth 51k
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1
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581
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
5 days ago Gordon Smyth 51k
1
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1
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581
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
5 days ago Gordon Smyth 51k
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581
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
5 days ago Gordon Smyth 51k
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1
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581
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
5 days ago Gordon Smyth 51k
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581
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
5 days ago Gordon Smyth 51k
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220
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Answer: Answer: Ploting of normalized counts after batch removal
11 days ago Gordon Smyth 51k
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177
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Answer: Answer: Subsetting RNAseq data | voomaByGroup()
26 days ago Gordon Smyth 51k
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238
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Answer: Answer: How to correctly adjust for gender in edgeR
4 weeks ago • updated 29 days ago Gordon Smyth 51k
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324
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Comment: Comment: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
4 weeks ago Gordon Smyth 51k
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324
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Answer: Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
4 weeks ago Gordon Smyth 51k
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344
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Answer: Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
5 weeks ago Gordon Smyth 51k
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375
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Comment: Comment: Log-cpm values from limma
5 weeks ago Gordon Smyth 51k
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413
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Comment: Comment: Method to find pathways different between 2 groups
5 weeks ago Gordon Smyth 51k
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413
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Answer: Answer: Method to find pathways different between 2 groups
5 weeks ago Gordon Smyth 51k
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392
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Comment: Comment: package goseq seems to be not available on the latest version of R
5 weeks ago Gordon Smyth 51k
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503
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Answer: Answer: limma Intercept vs No-intercept models completely changing DMR results?
5 weeks ago Gordon Smyth 51k
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392
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Answer: Answer: package goseq seems to be not available on the latest version of R
5 weeks ago Gordon Smyth 51k
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204
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Answer: Answer: NEED FOR NESSASORY HELP
6 weeks ago Gordon Smyth 51k
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191
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Answer: Answer: Gene-by-sample covariates in limma
6 weeks ago Gordon Smyth 51k
3
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2
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704
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Answer: Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
6 weeks ago Gordon Smyth 51k
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1.4k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
6 weeks ago Gordon Smyth 51k
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243
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Answer: Answer: Improving the design matrices vignette in RNAseq123
7 weeks ago Gordon Smyth 51k
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259
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Answer: Answer: Citation for edgeR user guide
7 weeks ago Gordon Smyth 51k
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221
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Answer: Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
7 weeks ago Gordon Smyth 51k
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1
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539
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Comment: Comment: FilterByExpr low counts with small sample size
7 weeks ago Gordon Smyth 51k
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1.4k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
7 weeks ago Gordon Smyth 51k
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1
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1.4k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
7 weeks ago Gordon Smyth 51k
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0
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1.4k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
7 weeks ago Gordon Smyth 51k
0
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1
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286
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Answer: Answer: RNAseq:Technical replicates from different batches
7 weeks ago Gordon Smyth 51k
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0
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246
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Comment: Comment: Finding DEGs by using edgeR
8 weeks ago Gordon Smyth 51k
3
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1
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539
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Answer: Answer: FilterByExpr low counts with small sample size
8 weeks ago Gordon Smyth 51k
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1
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179
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Answer: Answer: How to make DGEList and design matrix by edgeR package
8 weeks ago Gordon Smyth 51k
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1
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246
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Answer: Answer: Finding DEGs by using edgeR
8 weeks ago Gordon Smyth 51k
3
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1
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375
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Answer: Answer: Log-cpm values from limma
8 weeks ago Gordon Smyth 51k
0
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1
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539
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Comment: Comment: FilterByExpr low counts with small sample size
8 weeks ago Gordon Smyth 51k
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0
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1.4k
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Comment: Comment: Batch correction and repeated measures
8 weeks ago Gordon Smyth 51k
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1
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437
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Comment: Comment: Methylation Analysis experiment design using Limma
8 weeks ago Gordon Smyth 51k
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1
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437
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Answer: Answer: Methylation Analysis experiment design using Limma
8 weeks ago Gordon Smyth 51k
1
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1
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1.0k
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
8 weeks ago Gordon Smyth 51k
1
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1
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1.0k
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
8 weeks ago Gordon Smyth 51k
1
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0
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259
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Answer: Answer: Differentially expressed genes in monocle pseudotime
8 weeks ago Gordon Smyth 51k
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0
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406
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Answer: Answer: permutation test in edgeR
8 weeks ago • updated 7 weeks ago Gordon Smyth 51k
0
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0
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403
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Answer: Answer: Why is my gene not significantly differentially expressed?
8 weeks ago Gordon Smyth 51k
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2
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1.0k
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
8 weeks ago Gordon Smyth 51k
2
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1
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1.0k
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Answer: Answer: Light difference when using coef vs omit a group when compare 3 groups.
9 weeks ago Gordon Smyth 51k
0
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0
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211
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Answer: Answer: Limma design matrix only showing 3/4 treatments?
9 weeks ago Gordon Smyth 51k
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1
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2.2k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
9 weeks ago Gordon Smyth 51k
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0
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2.2k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
9 weeks ago Gordon Smyth 51k
5,103 results • Page 1 of 103
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