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Answer: Answer: How to correctly adjust for gender in edgeR
2 days ago Gordon Smyth 50k
1
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0
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224
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Comment: Comment: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
3 days ago Gordon Smyth 50k
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1
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224
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Answer: Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
4 days ago Gordon Smyth 50k
1
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1
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254
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Answer: Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
7 days ago Gordon Smyth 50k
2
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0
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304
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Comment: Comment: Log-cpm values from limma
8 days ago • updated 7 days ago Gordon Smyth 50k
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1
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314
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Comment: Comment: Method to find pathways different between 2 groups
10 days ago Gordon Smyth 50k
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1
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314
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Answer: Answer: Method to find pathways different between 2 groups
11 days ago Gordon Smyth 50k
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0
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261
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Comment: Comment: package goseq seems to be not available on the latest version of R
12 days ago • updated 11 days ago Gordon Smyth 50k
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0
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396
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Answer: Answer: limma Intercept vs No-intercept models completely changing DMR results?
14 days ago • updated 13 days ago Gordon Smyth 50k
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1
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261
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Answer: Answer: package goseq seems to be not available on the latest version of R
14 days ago • updated 13 days ago Gordon Smyth 50k
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0
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172
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Answer: Answer: NEED FOR NESSASORY HELP
15 days ago Gordon Smyth 50k
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0
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154
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Answer: Answer: Gene-by-sample covariates in limma
15 days ago Gordon Smyth 50k
3
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2
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619
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Answer: Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
15 days ago • updated 14 days ago Gordon Smyth 50k
1
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1
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1.3k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
18 days ago Gordon Smyth 50k
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1
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211
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Answer: Answer: Improving the design matrices vignette in RNAseq123
21 days ago Gordon Smyth 50k
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0
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203
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Answer: Answer: Citation for edgeR user guide
24 days ago Gordon Smyth 50k
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1
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190
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Answer: Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
25 days ago Gordon Smyth 50k
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1
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467
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Comment: Comment: FilterByExpr low counts with small sample size
26 days ago Gordon Smyth 50k
1
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1
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1.3k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
27 days ago Gordon Smyth 50k
2
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1
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1.3k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
27 days ago • updated 26 days ago Gordon Smyth 50k
1
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0
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1.3k
views
Comment: Comment: Why p value inconsistent when using different number of pathway score?
27 days ago Gordon Smyth 50k
0
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1
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237
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Answer: Answer: RNAseq:Technical replicates from different batches
28 days ago Gordon Smyth 50k
0
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0
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210
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Comment: Comment: Finding DEGs by using edgeR
28 days ago Gordon Smyth 50k
3
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1
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467
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Answer: Answer: FilterByExpr low counts with small sample size
28 days ago Gordon Smyth 50k
0
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1
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147
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Answer: Answer: How to make DGEList and design matrix by edgeR package
28 days ago Gordon Smyth 50k
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1
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210
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Answer: Answer: Finding DEGs by using edgeR
28 days ago Gordon Smyth 50k
3
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1
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304
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Answer: Answer: Log-cpm values from limma
28 days ago Gordon Smyth 50k
0
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1
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467
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Comment: Comment: FilterByExpr low counts with small sample size
29 days ago Gordon Smyth 50k
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0
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1.3k
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Comment: Comment: Batch correction and repeated measures
29 days ago Gordon Smyth 50k
0
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1
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361
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Comment: Comment: Methylation Analysis experiment design using Limma
4 weeks ago Gordon Smyth 50k
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1
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361
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Answer: Answer: Methylation Analysis experiment design using Limma
4 weeks ago Gordon Smyth 50k
1
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1
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974
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
4 weeks ago Gordon Smyth 50k
1
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1
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974
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
4 weeks ago Gordon Smyth 50k
1
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0
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207
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Answer: Answer: Differentially expressed genes in monocle pseudotime
4 weeks ago Gordon Smyth 50k
0
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0
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368
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Answer: Answer: permutation test in edgeR
4 weeks ago • updated 26 days ago Gordon Smyth 50k
0
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0
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368
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Answer: Answer: Why is my gene not significantly differentially expressed?
4 weeks ago Gordon Smyth 50k
1
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2
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974
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
4 weeks ago Gordon Smyth 50k
2
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1
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974
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Answer: Answer: Light difference when using coef vs omit a group when compare 3 groups.
5 weeks ago Gordon Smyth 50k
0
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0
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185
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Answer: Answer: Limma design matrix only showing 3/4 treatments?
5 weeks ago Gordon Smyth 50k
1
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1
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
5 weeks ago Gordon Smyth 50k
1
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0
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
5 weeks ago Gordon Smyth 50k
0
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0
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265
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Comment: Comment: Regressing out batch effects
6 weeks ago Gordon Smyth 50k
1
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1
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago Gordon Smyth 50k
0
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0
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985
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
0
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1
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462
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Comment: Comment: Using a change in a continuous explanatory variable to test changes in gene expr
6 weeks ago Gordon Smyth 50k
0
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1
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985
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
1
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1
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462
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Answer: Answer: Using a change in a continuous explanatory variable to test changes in gene expr
6 weeks ago Gordon Smyth 50k
0
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1
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195
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Answer: Answer: edgeR analysis: glm functions and offset matrix
6 weeks ago Gordon Smyth 50k
1
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0
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985
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
2
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1
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985
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
5,094 results • Page 1 of 102
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